| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2609395 = | 79 (0.800) | 6 (0.070) | 5/136 | NT | 9.1% | intergenic (‑225/+336) | USA300HOU_RS13450/USA300HOU_RS13455 | hypothetical protein/putative lipoprotein |
| ? | USA300TCH1516_ALE | 2609451 = | 53 (0.630) | intergenic (‑281/+280) | USA300HOU_RS13450/USA300HOU_RS13455 | hypothetical protein/putative lipoprotein | |||||
CAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2609496‑2609395‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagaagcttttTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTT > USA300TCH1516_ALE/2609451‑2609540 CAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGT < 1:1875375/91‑1 GCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTA < 1:2114866/91‑1 CATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAGAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAG < 1:4152686/91‑1 CATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAG > 1:661717/1‑91 CATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAG > 1:2408146/1‑91 CATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAG > 1:2408145/1‑91 CATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAG < 1:3049314/91‑1 CATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAG > 1:2224238/1‑91 TGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAA > 1:3025252/1‑91 TGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAA > 1:2220110/1‑91 GCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAG > 1:3964956/1‑91 GCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAG > 1:3945842/1‑91 GTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCT > 1:3557210/1‑91 GTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCT < 1:1585551/91‑1 TTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTT < 1:2849017/91‑1 TTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTT < 1:1408578/91‑1 TCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTT < 1:1941673/91‑1 TCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTT < 1:1939846/91‑1 TCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTT > 1:317481/1‑91 TTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCA > 1:2024497/1‑91 TCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCAT > 1:2732046/1‑91 TCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCAT > 1:1375852/1‑91 TAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGC > 1:850854/1‑91 GATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTT > 1:168949/1‑91 CAGGAACCTCATATTCCGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCT > 1:3374486/1‑91 TTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAAC > 1:3392623/1‑91 TTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAAC > 1:2454831/1‑91 TTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAAC > 1:1454707/1‑91 TAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACT < 1:285213/91‑1 TAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACT < 1:482926/91‑1 TAGAAGC‑TTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTT > 1:2731380/1‑91 AAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCC > 1:1411598/1‑91 AGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCG < 1:1026944/91‑1 GCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGT > 1:1464135/1‑91 CTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTT > 1:3060717/1‑91 TTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTT < 1:733037/91‑1 TTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTT < 1:808317/91‑1 CAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2609496‑2609395‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagaagcttttTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTT > USA300TCH1516_ALE/2609451‑2609540 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |