| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2609406 | 71 (0.720) | 13 (0.160) | 8/136 | NT | 18.7% | intergenic (‑236/+325) | USA300HOU_RS13450/USA300HOU_RS13455 | hypothetical protein/putative lipoprotein |
| ? | USA300TCH1516_ALE | = 2609438 | 53 (0.630) | intergenic (‑268/+293) | USA300HOU_RS13450/USA300HOU_RS13455 | hypothetical protein/putative lipoprotein | |||||
TCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2609305‑2609406‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcttctaaTGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTAT < USA300TCH1516_ALE/2609438‑2609351 TCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTA > 1:442067/1‑91TCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTA > 1:1789843/1‑91TCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTA > 1:1790261/1‑91TCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTA > 1:1790368/1‑91 CACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAA > 1:2224688/1‑91 ACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAA < 1:1263393/91‑1 ACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAA > 1:4100146/1‑91 TATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAG > 1:1625080/1‑91 ATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGC < 1:945583/91‑1 TTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCT < 1:558335/91‑1 TTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCT > 1:2145185/1‑91 TTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTT < 1:425940/91‑1 ATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACAGGAACCTCATATTCC < 1:1424261/91‑1 GTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCA < 1:3122950/91‑1 GTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACAGGAACCTCATATTCCGTATCA < 1:3237034/91‑1 GTTTAATAAGTCAGAAAATATGATAAAATCTGGATGTTCTTTAGGCATTAAAAGCTTTTAACATGATACAGGAACCTCATATTCCGTATCA < 1:3318051/91‑1 TTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCAT < 1:1095022/91‑1 AGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAA < 1:1897592/91‑1 AGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGGATCATGTTAGAA < 1:3196022/91‑1 TCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGC < 1:1415524/91‑1 GAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTT < 1:4079451/91‑1 GAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTT < 1:4079639/91‑1 AAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTA < 1:2120450/91‑1 AAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTA < 1:1468914/91‑1 TGTTCTTTAGACATTAAAAGCTTCTAACATGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTAC < 1:112212/91‑1 AAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTT > 1:2801700/1‑91 AAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCT > 1:1929322/1‑91 AAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCT < 1:378161/91‑1 AGCTTCAAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTGCTG > 1:3220511/1‑91 GCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGA > 1:852654/1‑91 TTCTGATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACT < 1:3448929/91‑1 TTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACT < 1:111285/91‑1 TCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTT > 1:3954013/1‑91 TCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTT > 1:2184370/1‑91 TCTAATGTGATACAGGAACCTCATATTCCGTATCATGATAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTT > 1:3500440/1‑91 TAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTAT < 1:3437089/91‑1 TAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTAT > 1:1622618/1‑91 TAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTAT > 1:4153274/1‑91 TAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTAT < 1:3437088/91‑1 TAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTAT < 1:3388065/91‑1 TAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTAT > 1:2788885/1‑91 TAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTAT < 1:812329/91‑1 TAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTAT < 1:247/91‑1 TCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2609305‑2609406‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcttctaaTGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTAT < USA300TCH1516_ALE/2609438‑2609351 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |