| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2610898 | 96 (0.980) | 5 (0.060) | 4/144 | NT | 5.4% | intergenic (‑373/+163) | USA300HOU_RS13455/USA300HOU_RS13460 | putative lipoprotein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2610913 | 90 (1.020) | intergenic (‑388/+148) | USA300HOU_RS13455/USA300HOU_RS13460 | putative lipoprotein/hypothetical protein | |||||
GATGATATATAGTTCAAGAAACATCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2610801‑2610898‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagttaaGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGAATTTTGA < USA300TCH1516_ALE/2610913‑2610824 gagGATATATAGTTCAAGAAACATCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAG < 1:2167539/88‑1GATGATATATAGTTCAAGAAACATCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAG < 1:869542/91‑1GATGATATATAGTTCAAGAAACATCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAG > 1:2694633/1‑91 ATGATATATAGTTCAAGAAACATCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGA > 1:2981466/1‑91 TGATATATAGTTCAAGAAACATCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAA > 1:353588/1‑91 GATATATAGTTCAAGAAACATCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAG > 1:2876387/1‑91 ATATATAGTTCAAGAAACATCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGT < 1:3509738/91‑1 TATAGTTCAAGAAACATCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAA < 1:827180/91‑1 TATAGTTCAAGAAACATCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAA < 1:826942/91‑1 TATAGTTCAAGAAACATCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAA > 1:1828193/1‑91 TATAGTTCAAAAAACATCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAA < 1:826988/91‑1 TTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAGCAACCAATCTTTGTTTAACTTCTTT < 1:2621591/91‑1 TAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAGCAACCAATCTTTGTTTAACTTCTTTT < 1:1289156/91‑1 AAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAGCAACCAATCTTTGTTTAACTTCTTTTT < 1:3197542/91‑1 AAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAGCAACCAATCTTTGTTTAACTTCTTTTTT < 1:1705109/91‑1 AAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAGCAACCAATCTTTGTTTAACTTCTTTTTT < 1:1705363/91‑1 GAAGTTGAGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGA > 1:2431782/1‑91 GAAGTTGAGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGA > 1:2430770/1‑91 GAAGTTAAGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGA > 1:2663252/1‑91 GAAGTTAAGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGA > 1:3515256/1‑91 AAGTTAAGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGAA > 1:807706/1‑91 AGTTAAGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGAAT > 1:302937/1‑91 AGTTAAGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGAAT > 1:3974018/1‑91 AGTTAAGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGAAT > 1:566598/1‑91 AGTTAAGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGAAT < 1:1289565/91‑1 AGTTAAGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGAAT > 1:1435538/1‑91 GTTAAGCAACCAATCTTTGTTTAACTTATTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGAATT < 1:1177404/91‑1 TTAAGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGAATTT < 1:2906605/91‑1 TAAGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGAATTTT > 1:392677/1‑91 TAAGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGAATTTT > 1:392879/1‑91 AAGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGAATTTTG < 1:985208/91‑1 AAGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGAATTTTG < 1:1516593/91‑1 AGCAGCCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGAATTTTGA < 1:3453485/91‑1 AGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGAATTTTGA < 1:2567589/91‑1 GATGATATATAGTTCAAGAAACATCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2610801‑2610898‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagttaaGCAACCAATCTTTGTTTAACTTCTTTTTTATTTTTTGGAAAATAAAGTTTTGAACATAATAAAATTTGATTATGTTTTAACGAATTTTGA < USA300TCH1516_ALE/2610913‑2610824 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |