BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2610898	96 (0.980)	5 (0.060)	4/144	NT	5.4%	intergenic (‑373/+163)	USA300HOU_RS13455/USA300HOU_RS13460	putative lipoprotein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2610913	90 (1.020)	5 (0.060)	4/144	NT	5.4%	intergenic (‑388/+148)	USA300HOU_RS13455/USA300HOU_RS13460	putative lipoprotein/hypothetical protein

Only 100 of 125 total aligned reads displayed.

ATCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGCCACTTATAGTCGAAATTATG  >  USA300TCH1516_ALE/2610823‑2610999

aTCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGc                                                                                        <  1:2688563/91‑1 (MQ=255)

aTCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGc                                                                                        >  1:2761228/1‑91 (MQ=255)

aTCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGc                                                                                        >  1:912805/1‑91 (MQ=255)

 tCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCt                                                                                       <  1:2567589‑M2/91‑2 (MQ=255)

 tCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGCTGCt                                                                                       <  1:3453485‑M2/91‑2 (MQ=255)

  cAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCtt                                                                                      <  1:1516593‑M2/91‑3 (MQ=255)

  cAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCtt                                                                                      <  1:985208‑M2/91‑3 (MQ=255)

   aaaaTTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCtta                                                                                     >  1:392879‑M2/1‑88 (MQ=255)

   aaaaTTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCtta                                                                                     >  1:392677‑M2/1‑88 (MQ=255)

      aTTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCttaact                                                                                  >  1:3974018‑M2/1‑85 (MQ=255)

      aTTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCttaact                                                                                  >  1:1435538‑M2/1‑85 (MQ=255)

      aTTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCttaact                                                                                  >  1:566598‑M2/1‑85 (MQ=255)

       ttCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCttaactt                                                                                 >  1:807706‑M2/1‑84 (MQ=255)

        tCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCttaacttc                                                                                >  1:2663252‑M2/1‑83 (MQ=255)

        tCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCttaacttc                                                                                >  1:3515256‑M2/1‑83 (MQ=255)

        tCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCtcaacttc                                                                                >  1:2431782‑M2/1‑83 (MQ=255)

        tCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCtcaacttc                                                                                >  1:2430770‑M2/1‑83 (MQ=255)

         cGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTcc                                                                               <  1:3150688/91‑1 (MQ=255)

         cGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTcc                                                                               <  1:1579227/91‑1 (MQ=255)

          gTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCa                                                                              >  1:3566386/1‑91 (MQ=255)

           ttAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCat                                                                             >  1:3107282/1‑91 (MQ=255)

              aaaCATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCattat                                                                          >  1:3478505/1‑91 (MQ=255)

              aaaCATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCattat                                                                          <  1:3702307/91‑1 (MQ=255)

              aaaCATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCattat                                                                          <  1:1972666/91‑1 (MQ=255)

               aaCATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCattatt                                                                         <  1:746727/91‑1 (MQ=255)

                aCATAATCAAATTTTATCATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTg                                                                        <  1:3552543/91‑1 (MQ=255)

                aCATAATAAAATTTGATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTCAACATCCataatta                                                                        >  1:2718262/1‑90 (MQ=37)

                   tAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAAt                                                                     <  1:1389492/91‑1 (MQ=255)

                      tCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCa                                                                  >  1:3814874/1‑91 (MQ=255)

                        aaaTTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCAtt                                                                >  1:787971/1‑91 (MQ=255)

                         aaTTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTa                                                               <  1:1092562/91‑1 (MQ=255)

                          aTTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAg                                                              <  1:3818096/91‑1 (MQ=255)

                           ttttATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGt                                                             <  1:3191788/91‑1 (MQ=255)

                           ttttATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGt                                                             <  1:1441460/91‑1 (MQ=255)

                            tttATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTc                                                            <  1:1755499/91‑1 (MQ=255)

                            tttATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTc                                                            <  1:3369356/91‑1 (MQ=255)

                               attatGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGa                                                         >  1:2899120/1‑91 (MQ=255)

                                 tatGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGAtt                                                       >  1:509241/1‑91 (MQ=255)

                                  atGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCGATTATTGAATTCATTAGTCCGAttt                                                      >  1:3875955/1‑91 (MQ=255)

                                  atGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGAttt                                                      >  1:2940619/1‑91 (MQ=255)

                                   tGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTg                                                     <  1:1231283/91‑1 (MQ=255)

                                    gTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGa                                                    <  1:3034766/91‑1 (MQ=255)

                                      tCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACa                                                  >  1:2133149/1‑91 (MQ=255)

                                       cAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACAt                                                 <  1:1443642/91‑1 (MQ=255)

                                         aaaCTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAg                                               <  1:2561941/91‑1 (MQ=255)

                                         aaaCTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAg                                               <  1:2561942/91‑1 (MQ=255)

                                         aaaCTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAg                                               >  1:2189768/1‑91 (MQ=255)

                                          aaCTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGa                                              >  1:1997328/1‑91 (MQ=255)

                                           aCTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGAt                                             >  1:2806934/1‑91 (MQ=255)

                                            cTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATc                                            <  1:1055802/91‑1 (MQ=255)

                                             tttATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATcc                                           <  1:3826011/91‑1 (MQ=255)

                                              ttATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATccc                                          >  1:854115/1‑91 (MQ=255)

                                              ttATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATccc                                          >  1:526480/1‑91 (MQ=255)

                                               tATTTTCCAAAAAATAAAAAAGAAGTTAATCAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCg                                         <  1:3327243/91‑1 (MQ=255)

                                               tATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCg                                         >  1:1878329/1‑91 (MQ=255)

                                                aTTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGa                                        <  1:2521373/91‑1 (MQ=255)

                                                 ttttCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGaa                                       >  1:4124938/1‑91 (MQ=255)

                                                 ttttCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGaa                                       >  1:3937510/1‑91 (MQ=255)

                                                 ttttCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGaa                                       >  1:2259700/1‑91 (MQ=255)

                                                 ttttCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGaa                                       >  1:2261529/1‑91 (MQ=255)

                                                 ttttCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGaa                                       >  1:1014006/1‑91 (MQ=255)

                                                 ttttCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGaa                                       >  1:1103061/1‑91 (MQ=255)

                                                     ccAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAaat                                   <  1:723500/91‑1 (MQ=255)

                                                      cAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAaata                                  >  1:1992467/1‑91 (MQ=255)

                                                      cAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAaata                                  >  1:3611202/1‑91 (MQ=255)

                                                       aaaaaaTAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAaataa                                 <  1:3955856/91‑1 (MQ=255)

                                                       aaaaaaTAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAaataa                                 >  1:3106192/1‑91 (MQ=255)

                                                       aaaaaaTAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAaataa                                 >  1:3106288/1‑91 (MQ=255)

                                                             tAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTa                           >  1:2830167/1‑91 (MQ=255)

                                                              aaaaaaGAAGTTAAACAAAGATTGGTTGCttaacttcttttttattttttggaaaataaagttttgaacataataaaatttgattatgttt                          <  1:1705109‑M2/91‑63 (MQ=255)

                                                              aaaaaaGAAGTTAAACAAAGATTGGTTGCttaacttcttttttattttttggaaaataaagttttgaacataataaaatttgattatgttt                          <  1:1705363‑M2/91‑63 (MQ=255)

                                                              aaaaaaGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTaa                          >  1:2815757/1‑91 (MQ=255)

                                                              aaaaaaGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTaa                          >  1:4035541/1‑91 (MQ=255)

                                                              aaaaaaGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTaa                          >  1:4035474/1‑91 (MQ=255)

                                                               aaaaaGAAGTTAAACAAAGATTGGTTGCttaacttcttttttattttttggaaaataaagttttgaacataataaaatttgattatgtttt                         <  1:3197542‑M2/91‑64 (MQ=255)

                                                                aaaaGAAGTTAAACAAAGATTGGTTGCttaacttcttttttattttttggaaaataaagttttgaacataataaaatttgattatgtttta                        <  1:1289156‑M2/91‑65 (MQ=255)

                                                                aaaaGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATa                        >  1:2916457/1‑91 (MQ=255)

                                                                 aaaGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAg                       >  1:1819214/1‑91 (MQ=255)

                                                                 aaaGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAg                       >  1:1820972/1‑91 (MQ=255)

                                                                   agaagTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGcc                     <  1:993248/91‑1 (MQ=255)

                                                                   agaagTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGcc                     <  1:993336/91‑1 (MQ=255)

                                                                     aagTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGACTTGACATAGATCCCGAAAAATAATGGCTAATAGCCAc                   <  1:3510498/91‑1 (MQ=255)

                                                                        ttAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGCCACTta                <  1:2954402/91‑1 (MQ=255)

                                                                        ttAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGCCACTta                <  1:2954667/91‑1 (MQ=255)

                                                                            aCAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGCCACTTATAGt            <  1:1023551/91‑1 (MQ=255)

                                                                            aCAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGCCACTTATAGt            <  1:1023629/91‑1 (MQ=255)

                                                                            aCAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGCCACTTATAGt            >  1:1609338/1‑91 (MQ=255)

                                                                             cAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATATCCACTTATAGTc           <  1:3188912/91‑1 (MQ=255)

                                                                             cAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGCCACTTATAGTc           <  1:1659411/91‑1 (MQ=255)

                                                                             cAAAGATTGGTTGCTTAACTTCCATTATTGAAATCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTACTAGCCACTTATAGTc           <  1:3528749/91‑1 (MQ=255)

                                                                                  aTTGGTTGCTTAACTTCCATTATTGAATTCATTGGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGCCACTTATAGTCGAAAt      <  1:3401907/91‑1 (MQ=255)

                                                                                   ttGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTGATAGCCACTTATAGTCGAAAtt     >  1:1244479/1‑91 (MQ=255)

                                                                                   ttGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTGATAGCCACTTATAGTCGAAAtt     >  1:1244316/1‑91 (MQ=255)

                                                                                   ttGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGCCACTTATAGTCGAAAtt     >  1:3769040/1‑91 (MQ=255)

                                                                                   ttGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGCCACTTATAGTCGAAAtt     >  1:3768955/1‑91 (MQ=255)

                                                                                    tGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGCCACTTATAGTCGAAATTa    <  1:383122/91‑1 (MQ=255)

                                                                                    tGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGCCACTTATAGTCGAAATTa    <  1:383308/91‑1 (MQ=255)

                                                                                      gTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGCCACTTATAGTCGAAATTATg  <  1:1152777/91‑1 (MQ=255)

                                                                                      gTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGCCACTTATAGTCGAAATTATg  <  1:1152661/91‑1 (MQ=255)

                                                                                      gTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGCCACTTATAGTCGAAATTATg  >  1:1736615/1‑91 (MQ=255)

ATCAAAATTCGTTAAAACATAATCAAATTTTATTATGTTCAAAACTTTATTTTCCAAAAAATAAAAAAGAAGTTAAACAAAGATTGGTTGCTTAACTTCCATTATTGAATTCATTAGTCCGATTTGACATAGATCCCGAAAAATAATGGCTAATAGCCACTTATAGTCGAAATTATG  >  USA300TCH1516_ALE/2610823‑2610999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.