| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2636356 = | 100 (1.020) | 5 (0.060) | 5/138 | NT | 6.5% | intergenic (‑409/+60) | fnbA_2/gntT | Fibronectin‑binding protein A/High‑affinity gluconate transporter |
| ? | USA300TCH1516_ALE | 2636404 = | 58 (0.680) | intergenic (‑457/+12) | fnbA_2/gntT | Fibronectin‑binding protein A/High‑affinity gluconate transporter | |||||
CAGGTATCATCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2636456‑2636356‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTT > USA300TCH1516_ALE/2636404‑2636491 CAGGTATCATCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGA < 1:2673594/91‑1 AGGTATCATCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAA > 1:3270257/1‑91 AGGTATCATCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAA > 1:2102459/1‑91 GTATCATCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAAC < 1:1092061/91‑1 GTATCATCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAAC > 1:3456403/1‑91 GTATCATCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAAC > 1:3095276/1‑91 GTATCATCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAAC < 1:1909100/91‑1 TATCATCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACA > 1:304709/1‑91 TATCATCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACA < 1:2465816/91‑1 TATCATCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACA < 1:2579346/91‑1 TATCATCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACA < 1:2579702/91‑1 ATCATCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACAC > 1:69348/1‑91 ATCATCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACAC > 1:2960911/1‑91 ATCATCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACAC < 1:1115007/91‑1 TCATCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACG < 1:274124/91‑1 CATCTTCATTCTATTCATCAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGT < 1:3902291/91‑1 TCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTT < 1:3643987/91‑1 TCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTT < 1:4122343/91‑1 CTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTA < 1:1327195/91‑1 CTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTA > 1:579808/1‑91 AATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTAATATTTAGTTAAACAAATAAGCTAATGAAT > 1:3387585/1‑91 GTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGAT > 1:12483/1‑91 TGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATA > 1:3066322/1‑91 TTAGGTAATTGCAATATATTGCCTTGAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGA > 1:4000536/1‑91 TAGGTAATTGCAATATATTGCCTTGAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAA > 1:2422795/1‑91 AACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGA > 1:1236857/1‑91 ACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCA < 1:2598590/91‑1 TTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGT > 1:3771265/1‑91 TTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGT < 1:407923/91‑1 TTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTT > 1:3777466/1‑91 CAGGTATCATCTTCATTTTATTCATTAGCTTATTTGTTTAACTAAATATTAAGTAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2636456‑2636356‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTT > USA300TCH1516_ALE/2636404‑2636491 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |