BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2636356 =	100 (1.020)	5 (0.060)	5/138	NT	6.5%	intergenic (‑409/+60)	fnbA_2/gntT	Fibronectin‑binding protein A/High‑affinity gluconate transporter
*	?	USA300TCH1516_ALE	2636404 =	58 (0.680)	5 (0.060)	5/138	NT	6.5%	intergenic (‑457/+12)	fnbA_2/gntT	Fibronectin‑binding protein A/High‑affinity gluconate transporter

Only 100 of 127 total aligned reads displayed.

TTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAG  >  USA300TCH1516_ALE/2636267‑2636446

ttGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATa                                                                                           <  1:1518465/91‑1 (MQ=255)

ttGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATa                                                                                           <  1:1518237/91‑1 (MQ=255)

 tGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATaa                                                                                          <  1:3091839/91‑1 (MQ=255)

 tGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATaa                                                                                          <  1:2145404/91‑1 (MQ=255)

 aacatggtcattattagaaacgattatttccgtttcaggtatcatcttcattttattcattagcttatttgtttaactaaatattaagTaa                                                                                          >  1:3777466‑M1/89‑91 (MQ=255)

  acatggtcattattagaaacgattatttccgtttcaggtatcatcttcattttattcattagcttatttgtttaactaaatattaagTaaa                                                                                         <  1:407923‑M1/4‑1 (MQ=255)

  acatggtcattattagaaacgattatttccgtttcaggtatcatcttcattttattcattagcttatttgtttaactaaatattaagTaaa                                                                                         >  1:3771265‑M1/88‑91 (MQ=255)

   aaaCGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAAc                                                                                        <  1:3230001/91‑1 (MQ=255)

   aaaCGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAAc                                                                                        <  1:733276/91‑1 (MQ=255)

   aaaCGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAAc                                                                                        <  1:2844709/91‑1 (MQ=255)

    aaCGCCTTTCATTACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACg                                                                                       <  1:1182393/91‑1 (MQ=255)

    aaCGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACg                                                                                       <  1:2672225/91‑1 (MQ=255)

     tggtcattattagaaacgattatttccgtttcaggtatcatcttcattttattcattagcttatttgtttaactaaatattaagTAAACgt                                                                                      <  1:2598590‑M1/7‑1 (MQ=255)

      cGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACgtg                                                                                     <  1:3186858/91‑1 (MQ=255)

       gCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACgtgt                                                                                    <  1:126037/91‑1 (MQ=255)

       gCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACgtgt                                                                                    >  1:326704/1‑91 (MQ=255)

        tcattattagaaacgattatttccgtttcaggtatcatcttcattttattcattagcttatttgtttaactaaatattaagTAAACGTGtt                                                                                   >  1:1236857‑M1/82‑91 (MQ=255)

         cTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGttt                                                                                  >  1:2148102/1‑91 (MQ=255)

         cTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGttt                                                                                  >  1:2148146/1‑91 (MQ=255)

          tttCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTc                                                                                 <  1:3964285/91‑1 (MQ=255)

            tcatcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCaa                                                                               >  1:4063398/1‑91 (MQ=255)

               tcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGc                                                                            >  1:2532735/1‑91 (MQ=255)

                caCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCa                                                                           <  1:435681/91‑1 (MQ=255)

                 aCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCaa                                                                          <  1:2790324/91‑1 (MQ=255)

                 aCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCaa                                                                          <  1:4000964/91‑1 (MQ=255)

                 aCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCaa                                                                          <  1:1009516/91‑1 (MQ=255)

                      aaaaTACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAatatat                                                                     <  1:2822531/91‑1 (MQ=255)

                      aaaaTACCCAATATACTGTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAatatat                                                                     <  1:3548773/91‑1 (MQ=255)

                        aaTACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTg                                                                   <  1:1860097/91‑1 (MQ=255)

                         aTACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGc                                                                  >  1:3701161/1‑91 (MQ=255)

                          tACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCa                                                                 >  1:943301/1‑91 (MQ=255)

                          tACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCa                                                                 >  1:975673/1‑91 (MQ=255)

                           aCCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCaa                                                                >  1:1429340/1‑91 (MQ=255)

                           aCCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCaa                                                                <  1:3019299/91‑1 (MQ=255)

                            cccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAAt                                                               >  1:1431331/1‑91 (MQ=255)

                            cccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAAt                                                               >  1:2239488/1‑91 (MQ=255)

                            cccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAAt                                                               <  1:1391286/91‑1 (MQ=255)

                            cccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAAt                                                               >  1:2419514/1‑91 (MQ=255)

                            cccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAAt                                                               >  1:2991193/1‑91 (MQ=255)

                            cccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAAt                                                               >  1:2008968/1‑91 (MQ=255)

                             ccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAAtt                                                              <  1:3015605/91‑1 (MQ=255)

                             ccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAAtt                                                              <  1:1991026/91‑1 (MQ=255)

                              cAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTa                                                             >  1:40580/1‑91 (MQ=255)

                                atatACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTAcc                                                           >  1:1014216/1‑91 (MQ=255)

                                atatACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTAcc                                                           <  1:219247/91‑1 (MQ=255)

                                atatACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTAcc                                                           <  1:3042897/91‑1 (MQ=255)

                                atatACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTAcc                                                           >  1:2709731/1‑91 (MQ=255)

                                atatACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTAcc                                                           <  1:219174/91‑1 (MQ=255)

                                  ttcaggtatcatcttcattttattcattagcttatttgtttaactaaatattaagTAAACGTGTTTCAAGGCAATATATTGCAATTACCTa                                                         >  1:2422795‑M1/56‑91 (MQ=255)

                                   tcaggtatcatcttcattttattcattagcttatttgtttaactaaatattaagTAAACGTGTTTCAAGGCAATATATTGCAATTACCTaa                                                        >  1:4000536‑M1/55‑91 (MQ=255)

                                   taCTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTaa                                                        >  1:4007796/1‑91 (MQ=255)

                                     cTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTaaaa                                                      <  1:3731253/91‑1 (MQ=255)

                                     cTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTaaaa                                                      <  1:422448/91‑1 (MQ=255)

                                      tttttATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTaaaaa                                                     >  1:1126055/1‑91 (MQ=255)

                                      tttttATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTaaaaa                                                     <  1:1521851/91‑1 (MQ=255)

                                      tttttATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTaaaaa                                                     >  1:503340/1‑91 (MQ=255)

                                        tttATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAaca                                                   >  1:225096/1‑91 (MQ=255)

                                         ttATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAGTAAACGTGTTTCAAGGCAATATATTGCAAGTACCTAAAAacac                                                  >  1:4144804/1‑91 (MQ=255)

                                         ttATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAACTAAACGTGTTTCAAGGCAATATATTGCAAGTACCTAAAAacac                                                  >  1:4144721/1‑91 (MQ=255)

                                         ttATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAacac                                                  >  1:1897616/1‑91 (MQ=255)

                                         ttATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAacac                                                  <  1:1177314/91‑1 (MQ=255)

                                         ttATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAacac                                                  >  1:341324/1‑91 (MQ=255)

                                           atatCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCGTGAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGt                                                >  1:3589250/1‑91 (MQ=255)

                                             atCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGttt                                              <  1:2851531/91‑1 (MQ=255)

                                             atCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGttt                                              >  1:3244195/1‑91 (MQ=255)

                                             atCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGttt                                              >  1:245993/1‑91 (MQ=255)

                                                gTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACt                                           >  1:1278373/1‑91 (MQ=255)

                                                gTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACt                                           <  1:294524/91‑1 (MQ=255)

                                                  tCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTa                                         <  1:3234550/91‑1 (MQ=255)

                                                  tCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTa                                         <  1:3234219/91‑1 (MQ=255)

                                                       ttCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATAtt                                    <  1:2631856/91‑1 (MQ=255)

                                                         cTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTa                                  >  1:2190183/1‑91 (MQ=255)

                                                          tGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAg                                 >  1:3908184/1‑91 (MQ=255)

                                                          tGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAg                                 >  1:3910662/1‑91 (MQ=255)

                                                          tGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAg                                 >  1:1676025/1‑91 (MQ=255)

                                                           gAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGt                                >  1:3936272/1‑91 (MQ=255)

                                                            aGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGtt                               >  1:2692829/1‑91 (MQ=255)

                                                             gTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTa                              <  1:2736621/91‑1 (MQ=255)

                                                             gTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTa                              <  1:3395714/91‑1 (MQ=255)

                                                              tATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaa                             >  1:22291/1‑91 (MQ=255)

                                                              tATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaa                             <  1:1798370/91‑1 (MQ=255)

                                                               aTTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaaa                            <  1:2393711/91‑1 (MQ=255)

                                                                tttCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAAc                           <  1:3648988/91‑1 (MQ=255)

                                                                   cAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACaaa                        >  1:1020645/1‑91 (MQ=255)

                                                                   cAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACaaa                        <  1:1774303/91‑1 (MQ=255)

                                                                   cAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACaaa                        <  1:1743703/91‑1 (MQ=255)

                                                                    aGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAAt                       >  1:2359877/1‑91 (MQ=255)

                                                                     gACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATa                      >  1:388470/1‑91 (MQ=255)

                                                                      aCGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATaa                     <  1:2773340/91‑1 (MQ=255)

                                                                       cGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAg                    <  1:2626329/91‑1 (MQ=255)

                                                                             tCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATg              <  1:1820534/91‑1 (MQ=255)

                                                                               tGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGaa            <  1:1286651/91‑1 (MQ=255)

                                                                                  aTAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaa         <  1:281687/91‑1 (MQ=255)

                                                                                  aTAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaa         <  1:3775407/91‑1 (MQ=255)

                                                                                    aaaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaaaa       >  1:690838/1‑91 (MQ=255)

                                                                                    aaaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaaaa       >  1:3654381/1‑91 (MQ=255)

                                                                                    aaaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaaaa       >  1:925921/1‑91 (MQ=255)

                                                                                      aaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATg     <  1:1154637/91‑1 (MQ=255)

                                                                                         TAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAg  >  1:579808‑M1/1‑91 (MQ=255)

                                                                                         TAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAg  <  1:1327195‑M1/91‑1 (MQ=255)

TTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAG  >  USA300TCH1516_ALE/2636267‑2636446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.