New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2636356 =	100 (1.020)	5 (0.060)	5/138	NT	6.5%	intergenic (‑409/+60)	fnbA_2/gntT	Fibronectin‑binding protein A/High‑affinity gluconate transporter
	?	USA300TCH1516_ALE	2636404 =	58 (0.680)					intergenic (‑457/+12)	fnbA_2/gntT	Fibronectin‑binding protein A/High‑affinity gluconate transporter

GTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAG  >  USA300TCH1516_ALE/2636315‑2636494                                                                                          |                                                                                           gTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACt                                                                                           <  1:294524/91‑1 (MQ=255) gTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACt                                                                                           >  1:1278373/1‑91 (MQ=255)  ttCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACtt                                                                                          <  1:1149704/91‑1 (MQ=255)   tCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTa                                                                                         <  1:3234550/91‑1 (MQ=255)   tCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTa                                                                                         <  1:3234219/91‑1 (MQ=255)    cGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTaa                                                                                        >  1:37397/1‑91 (MQ=255)        ttCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATAtt                                                                                    <  1:2631856/91‑1 (MQ=255)        attcattagcttatttgtttaactaaatattaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATAtt                                                                                    >  1:3387585‑M1/35‑91 (MQ=255)          cTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTa                                                                                  >  1:2190183/1‑91 (MQ=255)          cTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTa                                                                                  >  1:1821192/1‑91 (MQ=255)           tGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAg                                                                                 >  1:3603794/1‑91 (MQ=255)           tGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAg                                                                                 >  1:1469618/1‑91 (MQ=255)           tGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAg                                                                                 >  1:1676025/1‑91 (MQ=255)           tGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAg                                                                                 >  1:3908184/1‑91 (MQ=255)           tGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAg                                                                                 >  1:3910662/1‑91 (MQ=255)            gAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGt                                                                                >  1:3936272/1‑91 (MQ=255)            gAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGt                                                                                <  1:4008666/91‑1 (MQ=255)             aGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGtt                                                                               >  1:2692829/1‑91 (MQ=255)              gTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTa                                                                              <  1:2736621/91‑1 (MQ=255)              gTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTa                                                                              <  1:3395714/91‑1 (MQ=255)               tATTTCAGACGATTTTCTGCATAAACATAAACGTGTTTCAAGGCAATATATTGCAATTAACTAAAAACACGTTTACTTAATATTTAGTTaa                                                                             <  1:3869050/91‑1 (MQ=255)               tATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaa                                                                             <  1:1798370/91‑1 (MQ=255)               tATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaa                                                                             >  1:22291/1‑91 (MQ=255)                aTTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaaa                                                                            <  1:2393711/91‑1 (MQ=255)                 tttCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAAc                                                                           <  1:3648988/91‑1 (MQ=255)                    cAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACaaa                                                                        >  1:1020645/1‑91 (MQ=255)                    cAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACaaa                                                                        <  1:1774303/91‑1 (MQ=255)                    cAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACaaa                                                                        <  1:1743703/91‑1 (MQ=255)                     aGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAAt                                                                       >  1:2359877/1‑91 (MQ=255)                      gACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATa                                                                      >  1:388470/1‑91 (MQ=255)                       aCGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATaa                                                                     <  1:2773340/91‑1 (MQ=255)                        cGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAg                                                                    <  1:2626329/91‑1 (MQ=255)                              tCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATg                                                              <  1:1820534/91‑1 (MQ=255)                                tGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGaa                                                            <  1:1286651/91‑1 (MQ=255)                                 aatattaagtaaacgtgtttttaggtaattgcaatatattgccttgaaacacgtttaTTTAATATTTAGTTAAACAAATAAGCTAATGAAt                                                           >  1:3387585‑M2/58‑91 (MQ=255)                                   aTAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaa                                                         <  1:281736/91‑1 (MQ=255)                                   aTAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaa                                                         <  1:3775407/91‑1 (MQ=255)                                   aTAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaa                                                         <  1:281687/91‑1 (MQ=255)                                     aaaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaaaa                                                       >  1:3654381/1‑91 (MQ=255)                                     aaaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaaaa                                                       <  1:2237418/91‑1 (MQ=255)                                     aaaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaaaa                                                       >  1:925921/1‑91 (MQ=255)                                     aaaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaaaa                                                       >  1:690838/1‑91 (MQ=255)                                       aaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATg                                                     <  1:47547/91‑1 (MQ=255)                                       aaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATg                                                     <  1:1154637/91‑1 (MQ=255)                                          TAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAg                                                  <  1:1327195‑M1/91‑1 (MQ=255)                                          TAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAg                                                  >  1:579808‑M1/1‑91 (MQ=255)                                           AAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAga                                                 <  1:4122343‑M1/91‑1 (MQ=255)                                           AAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAga                                                 <  1:3643987‑M1/91‑1 (MQ=255)                                             ACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTGATGAATAGAATGAAgatg                                               <  1:3902291‑M1/91‑1 (MQ=255)                                              CGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgatga                                              <  1:274124‑M1/91‑1 (MQ=255)                                               gtgtttttaggtaattgcaatatattgccttgaaacacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgatgat                                             >  1:12483‑M2/44‑91 (MQ=255)                                               GTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgatgat                                             >  1:2960911‑M1/1‑91 (MQ=255)                                               GTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgatgat                                             >  1:69348‑M1/1‑91 (MQ=255)                                               GTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgatgat                                             <  1:1115007‑M1/91‑1 (MQ=255)                                                tgtttttaggtaattgcaatatattgccttgaaacacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATa                                            >  1:3066322‑M2/43‑91 (MQ=255)                                                TGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATa                                            >  1:304709‑M1/1‑91 (MQ=255)                                                TGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATa                                            <  1:2465816‑M1/91‑1 (MQ=255)                                                TGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATa                                            <  1:2579346‑M1/91‑1 (MQ=255)                                                TGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATa                                            <  1:2579702‑M1/91‑1 (MQ=255)                                                 GTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATAc                                           >  1:3095276‑M1/1‑91 (MQ=255)                                                 GTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATAc                                           <  1:1092061‑M1/91‑1 (MQ=255)                                                 GTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATAc                                           >  1:3456403‑M1/1‑91 (MQ=255)                                                 GTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATAc                                           <  1:1909100‑M1/91‑1 (MQ=255)                                                   TTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCt                                         >  1:3270257‑M1/1‑91 (MQ=255)                                                   TTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCt                                         >  1:2102459‑M1/1‑91 (MQ=255)                                                    TCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTg                                        <  1:2673594‑M1/91‑1 (MQ=255)                                                     ttaggtaattgcaatatattgccttgaaacacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGa                                       >  1:4000536‑M2/38‑91 (MQ=255)                                                      taggtaattgcaatatattgccttgaaacacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGaa                                      >  1:2422795‑M2/37‑91 (MQ=255)                                                      aaGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGaa                                      <  1:3323887/91‑1 (MQ=255)                                                      aaGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGaa                                      <  1:10542/91‑1 (MQ=255)                                                             tatatTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGaaa                               >  1:88980/1‑91 (MQ=255)                                                              atatTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaat                              <  1:2894170/91‑1 (MQ=255)                                                              atatTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaat                              <  1:3010873/91‑1 (MQ=255)                                                              atatTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaat                              <  1:3011231/91‑1 (MQ=255)                                                               tatTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaata                             >  1:3282023/1‑91 (MQ=255)                                                               tatTGCAATTACCTAAAAACACGTTTACTTAATATGTAGTTAAACAAATAAGCCAATGAATAAAATGAAGATGATACCTGAAACGGAaata                             <  1:618895/91‑1 (MQ=255)                                                                atTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaataa                            <  1:3817287/91‑1 (MQ=255)                                                                  tGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATc                          >  1:1391335/1‑91 (MQ=255)                                                                   gCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCg                         >  1:3225073/1‑91 (MQ=255)                                                                     aaTTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGtt                       <  1:3902369/91‑1 (MQ=255)                                                                     aaTTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGtt                       <  1:864682/91‑1 (MQ=255)                                                                       ttACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTc                     <  1:1282376/91‑1 (MQ=255)                                                                       ttACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTc                     >  1:3237204/1‑91 (MQ=255)                                                                       ttACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTc                     >  1:3237206/1‑91 (MQ=255)                                                                        tACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCt                    <  1:2105799/91‑1 (MQ=255)                                                                        tACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCt                    <  1:1162556/91‑1 (MQ=255)                                                                        tACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCt                    <  1:626684/91‑1 (MQ=255)                                                                         aCCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATTCCTGAAACGGAAATAATCGTTTCta                   >  1:3863571/1‑91 (MQ=255)                                                                         aCCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCta                   <  1:3795060/91‑1 (MQ=255)                                                                         aCCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCta                   <  1:2534671/91‑1 (MQ=255)                                                                          ccTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaa                  >  1:1025352/1‑91 (MQ=255)                                                                           cTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaat                 <  1:2992831/91‑1 (MQ=255)                                                                            tAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaata                <  1:2753940/91‑1 (MQ=255)                                                                                aacacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGa            >  1:1236857‑M2/11‑91 (MQ=255)                                                                                   acgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCa         <  1:2598590‑M2/84‑1 (MQ=255)                                                                                      tttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGt      <  1:407923‑M2/87‑1 (MQ=255)                                                                                      tttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGt      >  1:3771265‑M2/5‑91 (MQ=255)                                                                                       ttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGtt     >  1:3777466‑M2/4‑91 (MQ=255)                                                                                          cTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGCTACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAg  >  1:3288285/1‑91 (MQ=255)                                                                                          cTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAg  <  1:2428365/91‑1 (MQ=255)                                                                                          |                                                                                           GTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAG  >  USA300TCH1516_ALE/2636315‑2636494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.