| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2646370 = | 107 (1.090) | 10 (0.110) | 6/148 | NT | 9.9% | intergenic (‑83/‑464) | sauU/USA300HOU_RS13610 | putative sulfoacetate transporter SauU/putative membrane protein |
| ? | USA300TCH1516_ALE | 2646396 = | 83 (0.910) | intergenic (‑109/‑438) | sauU/USA300HOU_RS13610 | putative sulfoacetate transporter SauU/putative membrane protein | |||||
CGGAATTTAATAAAATTTTTATAGATTCTATTGTAAACGCTTTCCATGTCTGATAATATTATAAAAAATAACTTTGGTACAATTTTGTGACAAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2646465‑2646370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaagtTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTATTAA > USA300TCH1516_ALE/2646396‑2646483 CGGAATTTAATAAAATTTTTATAGATTCTATTGTAAACGCTTTCCATGTCTGATAATATTATAAAAAATAACTTTGGTACAATTTTGTGAC > 1:1350105/1‑91 GGAATTTAATAAAATTTTTATAGATTCTATTGTAAACGCTTTCCATGTCTGATAATATTATAAAAAATAACTTTGGTACATTTTTGTGACA > 1:3246399/1‑91 AATTTAATAAAATTTTTATAGATTCTATTGTAAACGCTTTCCATGTCTGATAATATTATAAAAAATAACTTTGGTACAATTTTGTGACAAA < 1:3144075/91‑1 AATTTAATAAAATTTTTATAGATTCTATTGTAAACGCTTTCCATGTCTGATAATATTATAAAAAATAACTTTGGTACAATTTTGTGACAAA > 1:678912/1‑91 AATTTAATAAAATTTTTATAGATTCTATTGTAAACGCTTTCCATGTCTGATAATATTATAAAAAATAACTTTGGTACAATTTTGTGACAAA < 1:496394/91‑1 ATTTAATAAAATTTTTATAGATTCTATTGTAAACGCTTTCCATGTCTGATAATATTATAAAAAATAACTTTGGTACAATTTTGTGACAAAG < 1:1400964/91‑1 ATTTAATAAAATTTTTATAGATTCTATTGTAAACGCTTTCCATGTCTGATAATATTATAAAAAATAACTTTGGTACAATTTTGTGACAAAG > 1:668889/1‑91 ATTTAATAAAATTTTTATAGATTCTATTGTAAACGCTTTCCATGTCTGATAATATTATAAAAAATAACTTTGGTACAATTTTGTGACAAAG < 1:661741/91‑1 TTTAATAAAATTTTTATAGATTCTATTGTAAACGCTTTCCATGTCTGATAATATTATAAAAAATAACTTTGGTACAATTTTGTGACAAAGT < 1:716791/91‑1 TTTTTATAGATTCTATTGTAAACGCTTTCCATGTCTGATAATATTATAAAAAATAACTTTGTCACAAAATTGTACCAAAGTTATTTTTTAT < 1:1031776/91‑1 TTTTATAGATTCTATTGTAAACGCTTTCCATGTCTGATAATATTATAAAAAATAACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATA < 1:2672852/91‑1 TTTTATAGATTCTATTGTAAACGCTTTCCATGTCTGATAATATTATAAAAAATAACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATA < 1:2673449/91‑1 TTCCATGTCTGATAATATTATAAAAAATAACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTT < 1:3606029/91‑1 TAACTTTGGTACAATTTTGTGACAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTA > 1:2486767/1‑91 TGGTACAATTTTGTGACAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCC > 1:2670059/1‑91 TGGTACAATTTTGTGACAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCC > 1:2694213/1‑91 TACAATTTTGTGACAAAGTTATTTTTTATAATATTATCAGACATGTAAAGCGTTTCCCATAGACTCTATAAAAATTTTATTAAATTCCGCT > 1:3605569/1‑91 TACAATTTTGTGACAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCT > 1:3605556/1‑91 TACAATTTTGTGACAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCT > 1:3605557/1‑91 CAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTAT < 1:85300/91‑1 CAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTAT < 1:1806407/91‑1 CAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTAT < 1:1806446/91‑1 CAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTAT < 1:3141482/91‑1 CAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTAT < 1:2663659/91‑1 AGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTATTAA > 1:3358270/1‑91 CGGAATTTAATAAAATTTTTATAGATTCTATTGTAAACGCTTTCCATGTCTGATAATATTATAAAAAATAACTTTGGTACAATTTTGTGACAAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2646465‑2646370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaagtTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTATTAA > USA300TCH1516_ALE/2646396‑2646483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |