BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2646370 =	107 (1.090)	10 (0.110)	6/148	NT	9.9%	intergenic (‑83/‑464)	sauU/USA300HOU_RS13610	putative sulfoacetate transporter SauU/putative membrane protein
*	?	USA300TCH1516_ALE	2646396 =	83 (0.910)	10 (0.110)	6/148	NT	9.9%	intergenic (‑109/‑438)	sauU/USA300HOU_RS13610	putative sulfoacetate transporter SauU/putative membrane protein

Only 100 of 140 total aligned reads displayed.

TCCTTCATAACTATTCCTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAA  >  USA300TCH1516_ALE/2646280‑2646460

tCCTTCATAACTATTCCTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTa                                                                                            >  1:2467221/1‑91 (MQ=255)

tCCTTCATAACTATTCCTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTa                                                                                            >  1:2466898/1‑91 (MQ=255)

 ccTTCATAACTATTCCTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTAc                                                                                           >  1:2795645/1‑91 (MQ=255)

 ccTTCATAACTATTCCTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTAc                                                                                           >  1:2790321/1‑91 (MQ=255)

 ccTTCATAACTATTCCTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTAc                                                                                           >  1:1628153/1‑91 (MQ=255)

  ttaatagcaaaagttaagcggaatttaataaaatttttatagattctattgtaaacgctttccatgtctgataatattataaaaaataACt                                                                                          >  1:3358270‑M1/89‑91 (MQ=255)

  cTTCATAACTATTCCTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACt                                                                                          >  1:1545471/1‑91 (MQ=255)

     cATAACTATTCCTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTg                                                                                       >  1:2386939/1‑91 (MQ=255)

     cATAACTATTCCTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTg                                                                                       >  1:4051212/1‑91 (MQ=255)

     atagcaaaagttaagcggaatttaataaaatttttatagattctattgtaaacgctttccatgtctgataatattataaaaaataACTTTg                                                                                       <  1:85300‑M1/6‑1 (MQ=255)

     atagcaaaagttaagcggaatttaataaaatttttatagattctattgtaaacgctttccatgtctgataatattataaaaaataACTTTg                                                                                       <  1:3141482‑M1/6‑1 (MQ=255)

     atagcaaaagttaagcggaatttaataaaatttttatagattctattgtaaacgctttccatgtctgataatattataaaaaataACTTTg                                                                                       <  1:1806407‑M1/6‑1 (MQ=255)

        aaCTATTCCTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTca                                                                                    <  1:4037407/91‑1 (MQ=255)

         aCTATTCCTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTcac                                                                                   <  1:2894268/91‑1 (MQ=255)

         aCTATTCCTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTcac                                                                                   <  1:2570853/91‑1 (MQ=255)

         aCTATTCCTACTTCCCTAATTAATTGTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTcac                                                                                   <  1:3862095/91‑1 (MQ=255)

          cTATTCCTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTcaca                                                                                  <  1:1744880/91‑1 (MQ=255)

           tATTCCTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCGCCCCTACTTTGTCACaa                                                                                 >  1:3556665/1‑91 (MQ=255)

           tATTCCTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACaa                                                                                 >  1:3903551/1‑91 (MQ=255)

            aTTACTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACaaa                                                                                <  1:3264448/91‑1 (MQ=255)

              tCCTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAAt                                                                              <  1:3602162/91‑1 (MQ=255)

               ccTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAAtt                                                                             >  1:2311856/1‑91 (MQ=255)

                 tACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGt                                                                           >  1:447010/1‑91 (MQ=255)

                 tACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGt                                                                           >  1:446951/1‑91 (MQ=255)

                  agcggaatttaataaaatttttatagattctattgtaaacgctttccatgtctgataatattataaaaaataACTTTGTCACAAAATTGTa                                                                          >  1:3605556‑M1/73‑91 (MQ=255)

                  agcggaatttaataaaatttttatagagtctatgggaaacgctttacatgtctgataatattataaaaaataACTTTGTCACAAAATTGTa                                                                          >  1:3605569‑M1/73‑91 (MQ=255)

                   cTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTAc                                                                         >  1:250856/1‑91 (MQ=255)

                   cTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTAc                                                                         >  1:1788263/1‑91 (MQ=255)

                     ggaatttaataaaatttttatagattctattgtaaacgctttccatgtctgataatattataaaaaataACTTTGTCACAAAATTGTACCa                                                                       >  1:2694213‑M1/70‑91 (MQ=255)

                     ggaatttaataaaatttttatagattctattgtaaacgctttccatgtctgataatattataaaaaataACTTTGTCACAAAATTGTACCa                                                                       >  1:2670059‑M1/70‑91 (MQ=255)

                         taattaatTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGt                                                                   >  1:215053/1‑91 (MQ=255)

                         taattaatTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGt                                                                   >  1:1334353/1‑91 (MQ=255)

                         taattaatTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGt                                                                   <  1:2656176/91‑1 (MQ=255)

                         taattaatTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGt                                                                   <  1:2655719/91‑1 (MQ=255)

                          aattaattTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGtt                                                                  <  1:1730755/91‑1 (MQ=255)

                            ttaattTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTAt                                                                >  1:747058/1‑91 (MQ=255)

                             taattTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTAtt                                                               >  1:2198319/1‑91 (MQ=255)

                              aattTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTAttt                                                              >  1:335945/1‑91 (MQ=255)

                              aattTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTAttt                                                              <  1:2531938/91‑1 (MQ=255)

                                ttttttAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTAttttt                                                            <  1:4114501/91‑1 (MQ=255)

                                ttttttAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTAttttt                                                            >  1:645694/1‑91 (MQ=255)

                                ttttttAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTAttttt                                                            <  1:4114916/91‑1 (MQ=255)

                                ttttttAAAACTGACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTAttttt                                                            >  1:3198636/1‑91 (MQ=255)

                                  ttttAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTta                                                          <  1:3254166/91‑1 (MQ=255)

                                  ttttAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTta                                                          <  1:2819737/91‑1 (MQ=255)

                                     tAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTataa                                                       >  1:557400/1‑91 (MQ=255)

                                     tAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTataa                                                       >  1:2092840/1‑91 (MQ=255)

                                       aaaCTTACCCTGTAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTataata                                                     >  1:3200193/1‑91 (MQ=255)

                                        aaCTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAatat                                                    >  1:2818836/1‑91 (MQ=255)

                                         aCTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAAtatt                                                   >  1:790257/1‑91 (MQ=255)

                                         aCTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAAtatt                                                   <  1:1038028/91‑1 (MQ=255)

                                         aCTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAAtatt                                                   >  1:1333585/1‑91 (MQ=255)

                                          cTTACCCTGAAACGTTAAAATTTTCGGACATATGGCATGTCCACCCCTACTTTGTCATAAAATTGTACCAAAGTTATTTTTTATAAtatta                                                  >  1:3683821/1‑91 (MQ=255)

                                           ttACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAAtattat                                                 >  1:1824151/1‑91 (MQ=255)

                                           ttACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAAtattat                                                 <  1:1854347/91‑1 (MQ=255)

                                             aCCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCa                                               >  1:2288670/1‑91 (MQ=255)

                                              cccTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAg                                              >  1:4013718/1‑91 (MQ=255)

                                              cccTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAg                                              <  1:3232259/91‑1 (MQ=255)

                                               ccTGAAACGTTATAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGa                                             >  1:3185506/1‑91 (MQ=255)

                                               ccTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGa                                             >  1:160206/1‑91 (MQ=255)

                                               ccTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGa                                             >  1:160269/1‑91 (MQ=255)

                                               ccTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGa                                             >  1:186190/1‑91 (MQ=255)

                                                    aaCGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATgg                                        <  1:1355596/91‑1 (MQ=255)

                                                     aCGTTAAAATTTTCGGAGATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGa                                       <  1:3553603/91‑1 (MQ=255)

                                                     aCGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGa                                       <  1:3559558/91‑1 (MQ=255)

                                                     aCGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGa                                       <  1:692613/91‑1 (MQ=255)

                                                     aCGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGa                                       <  1:3161669/91‑1 (MQ=255)

                                                     aCGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGa                                       <  1:2693867/91‑1 (MQ=255)

                                                      aaacgctttccatgtctgataatattataaaaaataACTTTGGTACAATTTTGTGACAAAGTTATTTTTTATAATATTATCAGACATGGaa                                      <  1:3606029‑M1/55‑1 (MQ=255)

                                                        ttAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAg                                    >  1:3025281/1‑91 (MQ=255)

                                                        ttAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAg                                    >  1:627889/1‑91 (MQ=255)

                                                        ttAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAg                                    >  1:1613485/1‑91 (MQ=255)

                                                        ttAAAATTTTCGGACATCCGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAg                                    <  1:3549897/91‑1 (MQ=255)

                                                             aTTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGttt                               <  1:1733948/91‑1 (MQ=255)

                                                             aTTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGttt                               >  1:3070571/1‑91 (MQ=255)

                                                             aTTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGttt                               >  1:3069148/1‑91 (MQ=255)

                                                                   ggACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATa                         >  1:2910004/1‑91 (MQ=255)

                                                                    gACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAg                        >  1:3796952/1‑91 (MQ=255)

                                                                      cATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGaa                      >  1:1495872/1‑91 (MQ=255)

                                                                      cATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGaa                      >  1:1495886/1‑91 (MQ=255)

                                                                          ccagaTGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCta                  >  1:3872538/5‑91 (MQ=255)

                                                                           ggCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCtat                 <  1:3582201/91‑1 (MQ=255)

                                                                           ggCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCtat                 >  1:3877179/1‑91 (MQ=255)

                                                                              aTGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATaaa              <  1:1066678/91‑1 (MQ=255)

                                                                               tataaaaaataACTTTGGTACAATTTTGTGACAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATaaaa             <  1:2673449‑M1/80‑1 (MQ=255)

                                                                               tataaaaaataACTTTGGTACAATTTTGTGACAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATaaaa             <  1:2672852‑M1/80‑1 (MQ=255)

                                                                                gTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATaaaaa            >  1:858063/1‑91 (MQ=255)

                                                                                gTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATaaaaa            >  1:3676962/1‑91 (MQ=255)

                                                                                ataaaaaataACTTTGGTACAATTTTGTGACAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATaaaaa            <  1:1031776‑M1/81‑1 (MQ=255)

                                                                                  ccACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAAtt          >  1:2043269/1‑91 (MQ=255)

                                                                                  ccACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAAtt          >  1:1284609/1‑91 (MQ=255)

                                                                                  ccACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAAtt          >  1:755917/1‑91 (MQ=255)

                                                                                   cACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAAttt         >  1:112452/1‑91 (MQ=255)

                                                                                   cACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAAttt         >  1:2769902/1‑91 (MQ=255)

                                                                                     ccccTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTtta       >  1:3472569/1‑91 (MQ=255)

                                                                                     ccccTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTtta       >  1:2528625/1‑91 (MQ=255)

                                                                                     ccccTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTtta       >  1:2579463/1‑91 (MQ=255)

                                                                                      cccTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTttat      <  1:2176754/91‑1 (MQ=255)

                                                                                       ccTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTttatt     >  1:3691979/1‑91 (MQ=255)

                                                                                          ACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTaaa  <  1:716791‑M1/91‑1 (MQ=255)

TCCTTCATAACTATTCCTACTTCCCTAATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAA  >  USA300TCH1516_ALE/2646280‑2646460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.