BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2646370 =	107 (1.090)	10 (0.110)	6/148	NT	9.9%	intergenic (‑83/‑464)	sauU/USA300HOU_RS13610	putative sulfoacetate transporter SauU/putative membrane protein
*	?	USA300TCH1516_ALE	2646396 =	83 (0.910)	10 (0.110)	6/148	NT	9.9%	intergenic (‑109/‑438)	sauU/USA300HOU_RS13610	putative sulfoacetate transporter SauU/putative membrane protein

Only 100 of 138 total aligned reads displayed.

AATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTATTAAAAC  >  USA300TCH1516_ALE/2646306‑2646486

aattaattTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGtt                                                                                            <  1:2119975/91‑1 (MQ=255)

aattaattTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGtt                                                                                            <  1:1730755/91‑1 (MQ=255)

 taataaaatttttatagattctattgtaaacgctttccatgtctgataatattataaaaaataACTTTGTCACAAAATTGTACCAAAGTTa                                                                                           >  1:2486767‑M1/64‑91 (MQ=255)

  ttaattTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTAt                                                                                          >  1:747058/1‑91 (MQ=255)

  ttaattTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTAt                                                                                          >  1:746366/1‑91 (MQ=255)

   taattTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTAtt                                                                                         <  1:3790197/91‑1 (MQ=255)

   taattTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTAtt                                                                                         >  1:2198319/1‑91 (MQ=255)

    aattTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTAttt                                                                                        >  1:335945/1‑91 (MQ=255)

      ttttttAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTAttttt                                                                                      <  1:4114916/91‑1 (MQ=255)

      ttttttAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTAttttt                                                                                      >  1:645694/1‑91 (MQ=255)

      ttttttAAAACTGACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTAttttt                                                                                      >  1:3198636/1‑91 (MQ=255)

        ttttAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTta                                                                                    <  1:3254166/91‑1 (MQ=255)

         tttttatagattctattgtaaacgctttccatgtctgataatattataaaaaataactttgtcacaaaattgtaccaaagtTATTTTTtat                                                                                   <  1:1031776‑M2/10‑1 (MQ=255)

          ttttatagattctattgtaaacgctttccatgtctgataatattataaaaaataactttgtcacaaaattgtaccaaagtTATTTTTtata                                                                                  <  1:2672852‑M2/11‑1 (MQ=255)

          ttAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTtata                                                                                  >  1:1502923/1‑91 (MQ=255)

           tAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTataa                                                                                 >  1:557400/1‑91 (MQ=255)

             aaaCTTACCCTGTAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTataata                                                                               >  1:3200193/1‑91 (MQ=255)

              aaCTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAatat                                                                              >  1:2818836/1‑91 (MQ=255)

               aCTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAAtatt                                                                             <  1:1038028/91‑1 (MQ=255)

               aCTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAAtatt                                                                             >  1:1333585/1‑91 (MQ=255)

                cTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAAtatta                                                                            >  1:2768845/1‑91 (MQ=255)

                 ttACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAAtattat                                                                           >  1:1824151/1‑91 (MQ=255)

                 ttACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAAtattat                                                                           <  1:1854347/91‑1 (MQ=255)

                   aCCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCa                                                                         >  1:2288670/1‑91 (MQ=255)

                    cccTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAg                                                                        >  1:4013718/1‑91 (MQ=255)

                    cccTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAg                                                                        >  1:1926629/1‑91 (MQ=255)

                    cccTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAg                                                                        <  1:3232259/91‑1 (MQ=255)

                     ccTGAAACGTTATAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGa                                                                       >  1:3185506/1‑91 (MQ=255)

                     ccTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGa                                                                       >  1:160269/1‑91 (MQ=255)

                     ccTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGa                                                                       >  1:160206/1‑91 (MQ=255)

                         aaaCGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATg                                                                   >  1:3300379/1‑91 (MQ=255)

                          aaCGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATgg                                                                  <  1:1355596/91‑1 (MQ=255)

                           aCGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGa                                                                 <  1:2693867/91‑1 (MQ=255)

                           aCGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGa                                                                 <  1:692613/91‑1 (MQ=255)

                           aCGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGa                                                                 <  1:3559558/91‑1 (MQ=255)

                              ttAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAg                                                              <  1:2337437/91‑1 (MQ=255)

                              ttAAAATTTTCGGACATCCGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAg                                                              <  1:3549897/91‑1 (MQ=255)

                                  aaTTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGtt                                                          >  1:1694729/1‑91 (MQ=255)

                                   ttccatgtctgataatattataaaaaataactttgtcacaaaattgtaccaaagtTATTTTTTATAATATTATCAGACATGGAAAGCGttt                                                         <  1:3606029‑M2/36‑1 (MQ=255)

                                   aTTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGttt                                                         >  1:3069148/1‑91 (MQ=255)

                                   aTTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGttt                                                         >  1:3070571/1‑91 (MQ=255)

                                      ttCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACa                                                      <  1:648287/91‑1 (MQ=255)

                                       tCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACaa                                                     >  1:3565249/1‑91 (MQ=255)

                                         ggACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATa                                                   >  1:2910004/1‑91 (MQ=255)

                                          gACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAg                                                  >  1:511309/1‑91 (MQ=255)

                                            cATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGaa                                                >  1:1495886/1‑91 (MQ=255)

                                            cATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGaa                                                >  1:1495872/1‑91 (MQ=255)

                                                ccagaTGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCta                                            >  1:3872538/5‑91 (MQ=255)

                                                 ggCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCtat                                           <  1:3582201/91‑1 (MQ=255)

                                                 ggCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCtat                                           >  1:3877179/1‑91 (MQ=255)

                                                   cATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATaa                                         >  1:386861/1‑91 (MQ=255)

                                                    aTGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATaaa                                        <  1:1066678/91‑1 (MQ=255)

                                                     tataaaaaataACTTTGGTACAATTTTGTGACAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATaaaa                                       <  1:2673449‑M1/80‑1 (MQ=255)

                                                      gTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATaaaaa                                      >  1:3676943/1‑91 (MQ=255)

                                                      gTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATaaaaa                                      >  1:3676962/1‑91 (MQ=255)

                                                      gTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATaaaaa                                      >  1:858063/1‑91 (MQ=255)

                                                      ataaaaaataACTTTGGTACAATTTTGTGACAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATaaaaa                                      <  1:1031776‑M1/81‑1 (MQ=255)

                                                        ccACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAAtt                                    >  1:755917/1‑91 (MQ=255)

                                                        ccACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAAtt                                    >  1:2043269/1‑91 (MQ=255)

                                                         cACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAAttt                                   >  1:112452/1‑91 (MQ=255)

                                                           ccccTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTtta                                 >  1:3472569/1‑91 (MQ=255)

                                                           ccccTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTtta                                 >  1:2579463/1‑91 (MQ=255)

                                                           ccccTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTtta                                 >  1:2528625/1‑91 (MQ=255)

                                                           ccccTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTtta                                 >  1:2528626/1‑91 (MQ=255)

                                                            cccTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTttat                                <  1:2176754/91‑1 (MQ=255)

                                                             ccTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTttatt                               >  1:3691979/1‑91 (MQ=255)

                                                               tACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTaa                             <  1:1316657/91‑1 (MQ=255)

                                                                 CTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAAt                           <  1:661741‑M1/91‑1 (MQ=255)

                                                                 CTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAAt                           <  1:1400964‑M1/91‑1 (MQ=255)

                                                                  TTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAAtt                          <  1:3144075‑M1/91‑1 (MQ=255)

                                                                  TTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAAtt                          >  1:678912‑M1/1‑91 (MQ=255)

                                                                  TTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAAtt                          <  1:496394‑M1/91‑1 (MQ=255)

                                                                    tggtacaattttgtgacaaagtTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTcc                        >  1:2694213‑M2/23‑91 (MQ=255)

                                                                    tggtacaattttgtgacaaagtTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTcc                        >  1:2670059‑M2/23‑91 (MQ=255)

                                                                       tacaattttgtgacaaagtTATTTTTTATAATATTATCAGACATGTAAAGCGTTTCCCATAGACTCTATAAAAATTTTATTAAATTCCGCt                     >  1:3605569‑M2/20‑91 (MQ=255)

                                                                       tacaattttgtgacaaagtTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCt                     >  1:3605557‑M2/20‑91 (MQ=255)

                                                                       cacaAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCt                     <  1:1909350/91‑1 (MQ=255)

                                                                       cacaAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCt                     <  1:3064516/91‑1 (MQ=255)

                                                                         caAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTa                   <  1:262869/91‑1 (MQ=255)

                                                                          aaaaTTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTaa                  <  1:1614786/91‑1 (MQ=255)

                                                                             aTTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACtt               >  1:1384127/1‑91 (MQ=255)

                                                                              ttGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACttt              <  1:3237194/91‑1 (MQ=255)

                                                                              ttGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACttt              <  1:3237260/91‑1 (MQ=255)

                                                                               tGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACtttt             >  1:2881784/1‑91 (MQ=255)

                                                                               tGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACtttt             >  1:2882971/1‑91 (MQ=255)

                                                                                gTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTg            <  1:2411157/91‑1 (MQ=255)

                                                                                gTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTg            <  1:2463729/91‑1 (MQ=255)

                                                                                 tACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTAAACTTTTGc           >  1:3966535/1‑91 (MQ=255)

                                                                                  aCCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCt          >  1:4125678/1‑91 (MQ=255)

                                                                                  aCCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCt          >  1:2804117/1‑91 (MQ=255)

                                                                                  aCCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCt          >  1:2546897/1‑91 (MQ=255)

                                                                                  aCCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCt          >  1:2546692/1‑91 (MQ=255)

                                                                                   ccAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTa         <  1:411192/91‑1 (MQ=255)

                                                                                   ccAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTa         <  1:1119283/91‑1 (MQ=255)

                                                                                    caaagtTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTAt        <  1:1806407‑M2/85‑1 (MQ=255)

                                                                                    caaagtTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTAt        <  1:1806446‑M2/85‑1 (MQ=255)

                                                                                    caaagtTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTAt        <  1:2663659‑M2/85‑1 (MQ=255)

                                                                                    caaagtTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTAt        <  1:85300‑M2/85‑1 (MQ=255)

                                                                                    caaagtTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTAt        <  1:3141482‑M2/85‑1 (MQ=255)

                                                                                          tATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTATTAAAAc  >  1:1842669/1‑91 (MQ=255)

AATTAATTTTTTAAAACTTACCCTGAAACGTTAAAATTTTCGGACATCTGGCATGTCCACCCCTACTTTGTCACAAAATTGTACCAAAGTTATTTTTTATAATATTATCAGACATGGAAAGCGTTTACAATAGAATCTATAAAAATTTTATTAAATTCCGCTTAACTTTTGCTATTAAAAC  >  USA300TCH1516_ALE/2646306‑2646486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.