| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2647507 | 72 (0.730) | 17 (0.220) | 10/124 | NT | 21.5% | intergenic (+62/+35) | USA300HOU_RS13610/ydhC | putative membrane protein/Inner membrane transport protein YdhC |
| ? | USA300TCH1516_ALE | = 2647518 | 68 (0.890) | intergenic (+73/+24) | USA300HOU_RS13610/ydhC | putative membrane protein/Inner membrane transport protein YdhC | |||||
TTACTTTGCTATACGTTACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2647400‑2647507‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagcagtgaatcattTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATTCATGCCTTTATGCTAACAACAATATTATTTTACTCTCTTAC < USA300TCH1516_ALE/2647518‑2647429 TTACTTTGCTATACGTTACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACA < 1:3583465/91‑1 ACTTTGCTATACGTTACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAA < 1:343279/91‑1 CTTTGCTATACGTTACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAA > 1:3770953/1‑91 TACGTTACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGA > 1:2205888/1‑91 TACGTTACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGA < 1:1271095/91‑1 ACGTTACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAA < 1:954180/91‑1 ACGTTACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAA < 1:2335271/91‑1 CGTTACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAAT > 1:473409/1‑91 CGTTACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAAT > 1:436023/1‑91 CGTTACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAAT > 1:2916646/1‑91 CGTTACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTGCTATAAACAAAAAGCAGTGAAT < 1:3079982/91‑1 GTTACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATC < 1:1266129/91‑1 TTACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAGTCA > 1:3346395/1‑91 TTACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCA > 1:3828624/1‑91 ACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATT < 1:1151351/91‑1 ACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATT > 1:1906058/1‑91 GGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAAT < 1:1258391/91‑1 GTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAATAGATGGA < 1:1349773/91‑1 GTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAATAGATGGA < 1:3889531/91‑1 GTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAATAGATGGA < 1:280138/91‑1 GTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAATAGATGGA < 1:2838131/91‑1 TAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAATAGATGGAA < 1:1933503/91‑1 AAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAATAGATGGAAT < 1:1895431/91‑1 AGAGCGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAATAGATGGAATG < 1:3455183/91‑1 AGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAATAGATGGAATG < 1:1524560/91‑1 AGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAATAGATGGAATG < 1:1524219/91‑1 AGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAATAGATGGAATG < 1:1524561/91‑1 GAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAATAGATGGAATGATT < 1:3066863/91‑1 GAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAATAGATGGAATGATT < 1:2784071/91‑1 AGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAATAGATGGAATGATTC < 1:2342029/91‑1 GTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAATAGATGGAATGATTCA < 1:3471650/91‑1 AAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAATAGATGGAATGATTCACT < 1:1521200/91‑1 AAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAATAGATGGAATGATTCACTG < 1:2948619/91‑1 CTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATTCATGCCTTTATGCTAA > 1:1436565/1‑91 AAAGCAGTGAATCATTTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGACATGTAAAATTCATGCCTTTATGCTAACAACAATATT > 1:300528/1‑91 AAAGCAGTGAATCATTTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATTCATGCCTTTATGCTAACAACAATATT > 1:1458554/1‑91 AAAGCAGTGAATCATTTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATTCATGCCTTTATGCTAACAACAATATT > 1:43740/1‑91 AGCAGTGAATCATTTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTACAATTCATGCCTTTATGCTAACAACAATATTAT > 1:3541306/1‑91 AGCAGTGAATCATTTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATTCATGCCTTTATGCTAACAACAATATTAc > 1:3088571/1‑90 AGCAGTGAATCATTTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATTCATGCCTTTATGCTAACAACAATATTAT < 1:215675/91‑1 CAGTGAATCATTTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTACAATTCATGCCTTTATGCTAACAACAATATTATTT > 1:1930454/1‑91 CAGTGAATCATTTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATTCATGCCTTTATGCTAACAACAATATTATTT < 1:2299616/91‑1 AGTGAATCATTTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATTCATGCCTTTATGCTAACAACAATATTATTTT < 1:4121077/91‑1 GTGAATCATTTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATTCATGCCTTTATGCTAACAACAATATTATTTTA > 1:351767/1‑91 GTGAATCATTTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATTCATGCCTTTATGCTAACAACAATATTATTTTA > 1:973572/1‑91 TGAATCATTTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATGCATGCCTTTATGCTAACAACAATATTATTTTAC > 1:3393340/1‑91 AATCATTTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATTCATGCCTTTATGCTAACAACAATATTATTTTACTC < 1:3545898/91‑1 CATTTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATTCATGCCTTTATGCTAACAACAATATTATTTTACTCTCT < 1:2010058/91‑1 ATTTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATTCGTGCCTTTATGCTAACAACAATATTATTTTACTCTCTT < 1:3499896/91‑1 TTTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATTCATGCCTTTATGCTAACAACAATATTATTTTACTCTCTTA > 1:2458587/1‑91 TTTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATTCATGCCTTTATGCTAACAACAATATTATTTTACTCTCTTA > 1:2458574/1‑91 TTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATTCATGCCTTTATGCTAACAACAATATTATTTTACTCTCTTAC < 1:477251/91‑1 TTACTTTGCTATACGTTACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2647400‑2647507‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagcagtgaatcattTCAATAGATGGAATGATTCACTGCTTTTTGTTTATAGAAATTTAAAATTCATGCCTTTATGCTAACAACAATATTATTTTACTCTCTTAC < USA300TCH1516_ALE/2647518‑2647429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |