| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2647507 | 72 (0.730) | 17 (0.220) | 10/124 | NT | 21.5% | intergenic (+62/+35) | USA300HOU_RS13610/ydhC | putative membrane protein/Inner membrane transport protein YdhC |
| ? | USA300TCH1516_ALE | = 2647518 | 68 (0.890) | intergenic (+73/+24) | USA300HOU_RS13610/ydhC | putative membrane protein/Inner membrane transport protein YdhC | |||||
Only 100 of 157 total aligned reads displayed.
ACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAACTATCTTTATATAAAGAAATATTACTA > USA300TCH1516_ALE/2647417‑2647597 | cATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTc < 1:790026/91‑1 (MQ=255) aTTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTcc > 1:1306218/1‑91 (MQ=255) aTTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTcc < 1:3509283/91‑1 (MQ=255) ttGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCa > 1:3587813/1‑91 (MQ=255) ggCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTtcaat < 1:1258391‑M1/91‑6 (MQ=255) ggCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATc < 1:3428619/91‑1 (MQ=255) ggCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATc < 1:2372928/91‑1 (MQ=255) aaCGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTAtt < 1:1073717/91‑1 (MQ=255) aCGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTg < 1:529342/91‑1 (MQ=255) gTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTtcaatagatgga < 1:3889531‑M1/91‑13 (MQ=255) gTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTtcaatagatgga < 1:280138‑M1/91‑13 (MQ=255) gTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAa < 1:477251‑M2/91‑2 (MQ=255) tAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAaa > 1:2458574‑M2/1‑89 (MQ=255) aaGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTtcaatagatggaat < 1:1895431‑M1/91‑15 (MQ=255) agagagTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTtcaatagatggaatg < 1:1524560‑M1/91‑16 (MQ=255) agagagTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTtcaatagatggaatg < 1:1524561‑M1/91‑16 (MQ=255) gagTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTtcaatagatggaatgatt < 1:2784071‑M1/91‑19 (MQ=255) gagTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTtcaatagatggaatgatt < 1:3066863‑M1/91‑19 (MQ=255) gagTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAaatgatt < 1:3545898‑M2/91‑8 (MQ=255) gTAAAATAATATTGTTGTTAGCATAAAGGCATGCATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAaatgattca > 1:3393340‑M2/1‑82 (MQ=255) gTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTtcaatagatggaatgattca < 1:3471650‑M1/91‑21 (MQ=255) tAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAaatgattcac > 1:351767‑M2/1‑81 (MQ=255) aaaTAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTtcaatagatggaatgattcactg < 1:2948619‑M1/91‑24 (MQ=255) aaaTAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAaatgattcactg < 1:2299616‑M2/91‑13 (MQ=255) aaaTAATATTGTTGTTAGCATAAAGGCATGAATTGTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAaatgattcactg > 1:1930454‑M2/1‑79 (MQ=255) gtaatatTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAaatgattcactgct > 1:3088571‑M2/2‑77 (MQ=255) ataataTTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAaatgattcactgct < 1:215675‑M2/91‑15 (MQ=255) aataTTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAaatgattcactgcttt > 1:1458554‑M2/1‑75 (MQ=255) atTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCtttttt < 1:943849/91‑1 (MQ=255) ttgttgTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTa < 1:1131760/91‑1 (MQ=255) tgttgtTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTaa < 1:343139/91‑1 (MQ=255) gttgttAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAg < 1:1943331/91‑1 (MQ=255) gttgttAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAg > 1:2009945/1‑91 (MQ=255) ttgttAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGt < 1:2846403/91‑1 (MQ=255) tgttAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGtt < 1:917286/91‑1 (MQ=255) ttAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTTCAATAGATGGaatgattcactgctttttgtttatag > 1:1436565‑M2/1‑65 (MQ=255) aGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTAtt < 1:1427643/91‑1 (MQ=255) aGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTAtt < 1:178614/91‑1 (MQ=255) aGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTAtt > 1:3502421/1‑91 (MQ=255) gCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTAttt > 1:2565187/1‑91 (MQ=255) gCATAAAGGCATGAACTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTAttt < 1:2532396/91‑1 (MQ=255) aaaGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCa < 1:3640064/91‑1 (MQ=255) aaGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCAt < 1:2475212/91‑1 (MQ=255) aGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATa < 1:3235383/91‑1 (MQ=255) cATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACtt < 1:3819682/91‑1 (MQ=255) ttttAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTg > 1:3905960/1‑91 (MQ=255) ttttAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTg < 1:3133742/91‑1 (MQ=255) ttttAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTg < 1:4037710/91‑1 (MQ=255) tAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGaaa > 1:429788/1‑91 (MQ=255) tAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGaaa > 1:431445/1‑91 (MQ=255) aaaTTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAg > 1:335392/1‑91 (MQ=255) aaaTTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAg < 1:1667340/91‑1 (MQ=255) aaaTTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAg > 1:123679/1‑91 (MQ=255) aaTTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGt < 1:1439633/91‑1 (MQ=255) aaTTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGt > 1:440447/1‑91 (MQ=255) tttCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCa > 1:3285989/1‑91 (MQ=255) tttCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCa < 1:1429485/91‑1 (MQ=255) tCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAAc > 1:1701215/1‑91 (MQ=255) cTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAACt < 1:2660366/91‑1 (MQ=255) cTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAACt < 1:1637005/91‑1 (MQ=255) aaCAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAACTATCtt < 1:4007369/91‑1 (MQ=255) aCAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAACTATCttt > 1:1022356/1‑91 (MQ=255) aaaGCAGTGAATCATTtcaatagatggaatgattcactgctttttgtttatagacatgtaaaattcatgcctttatgctaacaacaatatt > 1:300528‑M1/1‑16 (MQ=255) aaaGCAGTGAATCATTtcaatagatggaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatatt > 1:43740‑M1/1‑16 (MQ=255) aaGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAACTATCTTtatata < 1:1469439/91‑1 (MQ=255) aaGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAACTATCTTtatata < 1:2254404/91‑1 (MQ=255) aGCAGTGAATCATTtcaatagatggaatgattcactgctttttgtttatagaaatttacaattcatgcctttatgctaacaacaatattat > 1:3541306‑M1/1‑14 (MQ=255) aGCAGTGAATCATTtcaatagatggaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattat < 1:215675‑M1/91‑78 (MQ=255) gCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGACAGTCAACTATCTTTATATaaa > 1:1304751/1‑91 (MQ=255) gCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAACTATCTTTATATaaa > 1:1042008/1‑91 (MQ=255) cAGTGAATCATTtcaatagatggaatgattcactgctttttgtttatagaaatttacaattcatgcctttatgctaacaacaatattattt > 1:1930454‑M1/1‑12 (MQ=255) cAGTGAATCATTtcaatagatggaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattattt < 1:2299616‑M1/91‑80 (MQ=255) cAGTGAATCATTCCATCTATTGAaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattattt < 1:2948619‑M2/91‑69 (MQ=255) aGTGAATCATTtcaatagatggaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattatttt < 1:4121077‑M1/91‑81 (MQ=255) aGTGAATCATTCCATCTATTGAaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattatttt < 1:1521200‑M2/91‑70 (MQ=255) gTGAATCATTtcaatagatggaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattatttta > 1:973572‑M1/1‑10 (MQ=255) tGAATCATTtcaatagatggaatgattcactgctttttgtttatagaaatttaaaatgcatgcctttatgctaacaacaatattattttac > 1:3393340‑M1/1‑9 (MQ=255) tGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAACTATCTTTATATAAAGaaa < 1:433854/91‑1 (MQ=255) gAATCATTCCATCTATTGAaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattattttact < 1:2342029‑M2/91‑73 (MQ=255) gAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAACTATCTTTATATAAAGAAat > 1:2520614/1‑91 (MQ=255) aaTCATTtcaatagatggaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattattttactc < 1:3545898‑M1/91‑85 (MQ=255) aaTCATTCCATCTATTGAaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattattttactc < 1:3066863‑M2/91‑74 (MQ=255) aaTCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAACTATCTTTATATAAAGAAata > 1:3953417/1‑91 (MQ=255) aTCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAACTATCTTTATATAAAGAAatat < 1:1596113/91‑1 (MQ=255) tCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAACTATCTTTATATAAAGAAATAtt < 1:2473740/91‑1 (MQ=255) cATTtcaatagatggaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattattttactctct < 1:2010058‑M1/91‑88 (MQ=255) cATTCCATCTATTGAaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattattttactctct < 1:1524219‑M2/91‑77 (MQ=255) cATTCCATCTATTGAaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattattttactctct < 1:1524561‑M2/91‑77 (MQ=255) cATTCCATCTATTGAaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattattttacgctct < 1:3455183‑M2/91‑77 (MQ=255) cATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAACTATCTTTATATAAAGAAATATTa > 1:704674/1‑91 (MQ=255) aTTtcaatagatggaatgattcactgctttttgtttatagaaatttaaaattcgtgcctttatgctaacaacaatattattttactctctt < 1:3499896‑M1/91‑89 (MQ=255) aTTCCATCTATTGAaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattattttactctctt < 1:1895431‑M2/91‑78 (MQ=255) aTTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAACTATCTTTATATAAAGAAATATTAc < 1:1977935/91‑1 (MQ=255) aTTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAACTATCTTTATATAAAGAAATATTAc < 1:2721118/91‑1 (MQ=255) tttcaatagatggaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattattttactctctta > 1:2458587‑M1/1‑2 (MQ=255) ttCCATCTATTGAaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattattttactctctta < 1:1933503‑M2/91‑79 (MQ=255) tCCATCTATTGAaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattattttactctcttac < 1:2838131‑M2/91‑80 (MQ=255) tCCATCTATTGAaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattattttactctcttac < 1:3889531‑M2/91‑80 (MQ=255) tCCATCTATTGAaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattattttactctcttac < 1:1349773‑M2/91‑80 (MQ=255) tCCATCTATTGAaatgattcactgctttttgtttatagaaatttaaaattcatgcctttatgctaacaacaatattattttactctcttac < 1:280138‑M2/91‑80 (MQ=255) | ACATTGGCAAACGTAAGAGAGTAAAATAATATTGTTGTTAGCATAAAGGCATGAATTTTAAATTTCTATAAACAAAAAGCAGTGAATCATTCCATCTATTGAAATGATTCACTGCTTTTTTAAGTTTATTTGGCATACTTTAGCTGAAAGTCAACTATCTTTATATAAAGAAATATTACTA > USA300TCH1516_ALE/2647417‑2647597 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |