New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2661788 =	66 (0.670)	16 (0.200)	12/128	NT	22.3%	intergenic (‑181/‑140)	ybiV/yydI	Sugar phosphatase YbiV/putative peptide export ATP‑binding protein YydI
	?	USA300TCH1516_ALE	2661832 =	59 (0.750)					intergenic (‑225/‑96)	ybiV/yydI	Sugar phosphatase YbiV/putative peptide export ATP‑binding protein YydI

ACCGATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2661893‑2661788 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTT  >  USA300TCH1516_ALE/2661832‑2661921                                                                                                                                                                                                      ACCGATATTTAATGGTATTTTTAAAAATTCTTTCACATTATGTGTAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATA                                                                                                           <  1:4145253/91‑1    GATATTTAATTGTATTTTTAAAAATTCTTTCATATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAAT                                                                                                        <  1:3530671/91‑1     ATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATA                                                                                                       >  1:4069244/1‑91     ATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATA                                                                                                       >  1:4069294/1‑91      TATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATAT                                                                                                      >  1:242711/1‑91         TTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGT                                                                                                   <  1:3634228/91‑1          TAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTG                                                                                                  <  1:1051500/91‑1          TAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTG                                                                                                  <  1:541550/91‑1          TAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTG                                                                                                  >  1:1704604/1‑91          TAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTG                                                                                                  >  1:219084/1‑91          TAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTG                                                                                                  <  1:1989418/91‑1            ATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTG                                                                                                >  1:107890/1‑91            ATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTG                                                                                                <  1:3581527/91‑1            ATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTG                                                                                                >  1:3045400/1‑91             TTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGA                                                                                               <  1:2645411/91‑1              TGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGAT                                                                                              >  1:295382/1‑91               GTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATA                                                                                             <  1:2174023/91‑1                TATTTTTAAAAATTCTTTCACGTTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATAT                                                                                            <  1:3922388/91‑1                TATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATAT                                                                                            <  1:3918683/91‑1                                                        AATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTT                                                    >  1:649396/1‑91                                                           TAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAA                                                 >  1:3931759/1‑91                                                           TAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTCAAA                                                 >  1:3273576/1‑91                                                              TATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAAT                                              >  1:2208573/1‑91                                                                TATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATAC                                            >  1:499692/1‑91                                                                       CTATATTTTGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAA                                     >  1:1950982/1‑91                                                                         ATATTTTGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATA                                   >  1:292625/1‑91                                                                          TATTTTGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATAT                                  >  1:4042183/1‑91                                                                          TATTTTGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATAT                                  >  1:3999592/1‑91                                                                          TATTTTGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATAT                                  >  1:3998824/1‑91                                                                           ATTTTGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATC                                 >  1:372859/1‑91                                                                             TTTGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGG                               >  1:120439/1‑91                                                                              TTGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGT                              >  1:319775/1‑91                                                                              TTGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGT                              >  1:1436925/1‑91                                                                               TGTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTG                             >  1:1350509/1‑91                                                                                GTCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGT                            >  1:406136/1‑91                                                                                           AAATATAGTGTGATATACTAATTTATAACATCTGTACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCT                 <  1:3400425/91‑1                                                                                           AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCT                 <  1:3400448/91‑1                                                                                           AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCT                 >  1:223801/1‑91                                                                                            AATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTT                >  1:1710969/1‑91                                                                                            AATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTT                <  1:72313/91‑1                                                                                            AATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTT                <  1:375329/91‑1                                                                                              TATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTA              <  1:3231194/91‑1                                                                                              TATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTA              >  1:2111163/1‑91                                                                                               ATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTACATATCGGTGTAATAAATCCCTTTAT             >  1:3882535/1‑91                                                                                               ATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTAT             >  1:918434/1‑91                                                                                                 AGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATAC           <  1:3249851/91‑1                                                                                                 AGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATAC           <  1:1872558/91‑1                                                                                                 AGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATAC           <  1:2792283/91‑1                                                                                                 AGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATAC           >  1:4007497/1‑91                                                                                                 AGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATAC           <  1:2459940/91‑1                                                                                                  GTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACA          <  1:2025128/91‑1                                                                                                  GTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACA          <  1:2189320/91‑1                                                                                                  GTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACA          >  1:2735750/1‑91                                                                                                   TGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACAT         >  1:1788035/1‑91                                                                                                   TGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACAT         >  1:116087/1‑91                                                                                                    GTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATA        >  1:714168/1‑91                                                                                                       ATATACTAATTGATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGA     <  1:3761961/91‑1                                                                                                         ATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGT   <  1:853281/91‑1                                                                                                         ATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGT   <  1:853719/91‑1                                                                                                         ATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGT   <  1:853940/91‑1                                                                                                          TACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTT  <  1:2800374/91‑1                                                                                                          TACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTT  >  1:1330187/1‑91                                                                                                          TACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTT  >  1:1330137/1‑91                                                                                                                                                                                                      ACCGATATTTAATTGTATTTTTAAAAATTCTTTCACATTATGTATAGATGTTATAAATTAGTATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2661893‑2661788 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTT  >  USA300TCH1516_ALE/2661832‑2661921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.