BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2661788 =	66 (0.670)	16 (0.200)	12/128	NT	22.3%	intergenic (‑181/‑140)	ybiV/yydI	Sugar phosphatase YbiV/putative peptide export ATP‑binding protein YydI
*	?	USA300TCH1516_ALE	2661832 =	59 (0.750)	16 (0.200)	12/128	NT	22.3%	intergenic (‑225/‑96)	ybiV/yydI	Sugar phosphatase YbiV/putative peptide export ATP‑binding protein YydI

Only 100 of 150 total aligned reads displayed.

GGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTG  >  USA300TCH1516_ALE/2661742‑2661922

ggATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGAtata                                                                                            <  1:1420912/91‑1 (MQ=255)

ggATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGAtata                                                                                            <  1:1247986/91‑1 (MQ=255)

 gATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATAc                                                                                           <  1:3924084/91‑1 (MQ=255)

 gATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATAc                                                                                           <  1:3924265/91‑1 (MQ=255)

  atatAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACt                                                                                          <  1:3031960/91‑1 (MQ=255)

  atatAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACt                                                                                          <  1:3727492/91‑1 (MQ=255)

   tttgaaaattctttcacattatgtatagatgttataaattagtATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTa                                                                                         >  1:3273576‑M1/44‑91 (MQ=255)

   tataGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTa                                                                                         >  1:1791823/1‑91 (MQ=255)

    ataGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTaa                                                                                        >  1:1810105/1‑91 (MQ=255)

     taGCATTCAGAGGCGAATATAAATTTCAGAATTTTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATGGTGTGATATACTAAt                                                                                       <  1:3545067/91‑1 (MQ=255)

      aaaaattctttcacattatgtatagatgttataaattagtATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAAtt                                                                                      >  1:649396‑M1/41‑91 (MQ=255)

      aGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAAtt                                                                                      <  1:1180124/91‑1 (MQ=255)

       gCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAAttt                                                                                     >  1:3384411/1‑91 (MQ=255)

         aTTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTtat                                                                                   <  1:3950015/91‑1 (MQ=255)

         aTTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTtat                                                                                   <  1:2581914/91‑1 (MQ=255)

          ttCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTtata                                                                                  >  1:472442/1‑91 (MQ=255)

          ttCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTtata                                                                                  >  1:574781/1‑91 (MQ=255)

            cAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAAc                                                                                >  1:1490927/1‑91 (MQ=255)

               agGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATc                                                                             >  1:856399/1‑91 (MQ=255)

               agGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATc                                                                             >  1:2855613/1‑91 (MQ=255)

               agGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATc                                                                             >  1:14888/1‑91 (MQ=255)

                ggCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCt                                                                            <  1:2533850/91‑1 (MQ=255)

                  cGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCtat                                                                          <  1:1254102/91‑1 (MQ=255)

                  cGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCtat                                                                          <  1:381234/91‑1 (MQ=255)

                  cGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCtat                                                                          <  1:3412626/91‑1 (MQ=255)

                  cGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCtat                                                                          <  1:3713705/91‑1 (MQ=255)

                  cGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCtat                                                                          >  1:3675500/1‑91 (MQ=255)

                  cGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCtat                                                                          >  1:2090879/1‑91 (MQ=255)

                  cGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCtat                                                                          >  1:2165575/1‑91 (MQ=255)

                   gAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCtata                                                                         >  1:14304/1‑91 (MQ=255)

                      cATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACAt                                                                      >  1:757088/1‑91 (MQ=255)

                      cATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACAt                                                                      <  1:2706828/91‑1 (MQ=255)

                       aTAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATa                                                                     >  1:3085066/1‑91 (MQ=255)

                          aaTTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAAtg                                                                  >  1:236688/1‑91 (MQ=255)

                             ttCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGa                                                               >  1:3739014/1‑91 (MQ=255)

                             ttCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGa                                                               <  1:1859772/91‑1 (MQ=255)

                                  aaTATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGaa                                                          >  1:1772722/1‑91 (MQ=255)

                                     atTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAAttt                                                       <  1:688776/91‑1 (MQ=255)

                                      ttGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAAtttt                                                      >  1:195870/1‑91 (MQ=255)

                                       aattagtatatcacactatattttgtctaaatgataaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAAttttt                                                     >  1:649396‑M2/52‑91 (MQ=255)

                                         tAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTaa                                                   <  1:2747531/91‑1 (MQ=255)

                                          tagtatatcacactatattttgtctaaatgataaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTaaa                                                  >  1:3931759‑M2/49‑91 (MQ=255)

                                          aaaaaTATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTaaa                                                  >  1:2476376/1‑91 (MQ=255)

                                          aaaaaTATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTaaa                                                  <  1:3919736/91‑1 (MQ=255)

                                          aaaaaTATCACACTATATTTATCATTTAGACAAAAGATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTaaa                                                  <  1:2743924/91‑1 (MQ=255)

                                             tatatcacactatattttgtctaaatgataaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAAt                                               >  1:2208573‑M2/46‑91 (MQ=255)

                                             aaTATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAAt                                               <  1:120653/91‑1 (MQ=255)

                                              ATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATa                                              <  1:3918683‑M1/91‑1 (MQ=255)

                                               tatcacactatattttgtctaaatgataaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATAc                                             >  1:499692‑M2/44‑91 (MQ=255)

                                                 TCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACaa                                           <  1:2645411‑M1/91‑1 (MQ=255)

                                                  CACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAAt                                          >  1:107890‑M1/1‑91 (MQ=255)

                                                  CACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAAt                                          >  1:3045400‑M1/1‑91 (MQ=255)

                                                    CACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTa                                        >  1:219084‑M1/1‑91 (MQ=255)

                                                    CACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTa                                        <  1:1989418‑M1/91‑1 (MQ=255)

                                                    CACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTa                                        <  1:541550‑M1/91‑1 (MQ=255)

                                                    CACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTa                                        >  1:1704604‑M1/1‑91 (MQ=255)

                                                    CACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTa                                        <  1:1051500‑M1/91‑1 (MQ=255)

                                                     ACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTaa                                       <  1:3634228‑M1/91‑1 (MQ=255)

                                                      ctatattttgtctaaatgataaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTaaa                                      >  1:1950982‑M2/37‑91 (MQ=255)

                                                        atattttgtctaaatgataaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAata                                    >  1:292625‑M2/35‑91 (MQ=255)

                                                         tattttgtctaaatgataaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAatat                                   >  1:3999592‑M2/34‑91 (MQ=255)

                                                         tattttgtctaaatgataaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAatat                                   >  1:3998824‑M2/34‑91 (MQ=255)

                                                         TATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAatat                                   >  1:4069294‑M1/1‑91 (MQ=255)

                                                          ATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATATGAAAGAATTTTTAAAAATACAATTAAATATc                                  <  1:3530671‑M1/91‑1 (MQ=255)

                                                            tttgtctaaatgataaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCgg                                >  1:120439‑M2/31‑91 (MQ=255)

                                                             ttgtctaaatgataaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGgt                               >  1:319775‑M2/30‑91 (MQ=255)

                                                             TATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTACACATAATGTGAAAGAATTTTTAAAAATACCATTAAATATCGGt                               <  1:4145253‑M1/91‑1 (MQ=255)

                                                               tCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGgtgt                             >  1:1759877/1‑91 (MQ=255)

                                                               gtctaaatgataaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGgtgt                             >  1:406136‑M2/28‑91 (MQ=255)

                                                                 aTTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGtaa                           <  1:2661832/91‑1 (MQ=255)

                                                                 aTTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGtaa                           <  1:599413/91‑1 (MQ=255)

                                                                  tttAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGtaat                          >  1:465174/1‑91 (MQ=255)

                                                                   ttAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGtaata                         >  1:1982743/1‑91 (MQ=255)

                                                                    tAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGtaataa                        >  1:2326465/1‑91 (MQ=255)

                                                                     aGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATaaa                       >  1:3546952/1‑91 (MQ=255)

                                                                     aGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATaaa                       <  1:1765085/91‑1 (MQ=255)

                                                                      gACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAAt                      <  1:3735257/91‑1 (MQ=255)

                                                                        cAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATcc                    >  1:1623568/1‑91 (MQ=255)

                                                                         aaaaTATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATccc                   <  1:3877566/91‑1 (MQ=255)

                                                                          aaatatagtgtgatatACTAATTTATAACATCTGTACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCt                  <  1:3400425‑M2/75‑1 (MQ=255)

                                                                          aaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCt                  >  1:223801‑M2/17‑91 (MQ=255)

                                                                             tatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTta               >  1:2111163‑M2/14‑91 (MQ=255)

                                                                              atagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTACATATCGGTGTAATAAATCCCTTtat              >  1:3882535‑M2/13‑91 (MQ=255)

                                                                                agtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATAc            <  1:2459940‑M2/81‑1 (MQ=255)

                                                                                agtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATAc            <  1:2792283‑M2/81‑1 (MQ=255)

                                                                                agtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATAc            <  1:3249851‑M2/81‑1 (MQ=255)

                                                                                agtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATAc            >  1:4007497‑M2/11‑91 (MQ=255)

                                                                                agtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATAc            <  1:1872558‑M2/81‑1 (MQ=255)

                                                                                 gtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACa           <  1:2189320‑M2/82‑1 (MQ=255)

                                                                                 gtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACa           <  1:2025128‑M2/82‑1 (MQ=255)

                                                                                 gtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACa           >  1:2735750‑M2/10‑91 (MQ=255)

                                                                                  tgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACAt          >  1:116087‑M2/9‑91 (MQ=255)

                                                                                  tgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACAt          >  1:1788035‑M2/9‑91 (MQ=255)

                                                                                   gtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATa         >  1:714168‑M2/8‑91 (MQ=255)

                                                                                      atatACTAATTGATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGa      <  1:3761961‑M2/87‑1 (MQ=255)

                                                                                        atACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGt    <  1:853281‑M2/89‑1 (MQ=255)

                                                                                        atACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGt    <  1:853940‑M2/89‑1 (MQ=255)

                                                                                         tACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGtt   >  1:1330187‑M2/2‑91 (MQ=255)

                                                                                         tACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGtt   >  1:1330137‑M2/2‑91 (MQ=255)

                                                                                          aCTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTg  >  1:2529050/1‑91 (MQ=255)

GGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTG  >  USA300TCH1516_ALE/2661742‑2661922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.