| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2661803 | 67 (0.680) | 7 (0.090) | 6/128 | NT | 11.1% | intergenic (‑196/‑125) | ybiV/yydI | Sugar phosphatase YbiV/putative peptide export ATP‑binding protein YydI |
| ? | USA300TCH1516_ALE | = 2661815 | 59 (0.750) | intergenic (‑208/‑113) | ybiV/yydI | Sugar phosphatase YbiV/putative peptide export ATP‑binding protein YydI | |||||
CACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2661699‑2661803‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atatcacactatatttTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTTTG < USA300TCH1516_ALE/2661815‑2661726 CACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAAT > 1:2043033/1‑91CACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAAT > 1:1522313/1‑91 ACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATA < 1:2790399/91‑1 TTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCA > 1:39982/1‑91 TGAGATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATTACAC < 1:3267508/91‑1 TGAGATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACAC < 1:3265646/91‑1 TGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACAC < 1:110747/91‑1 TGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACAC < 1:694037/91‑1 GAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACT > 1:2025550/1‑91 AATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTAT < 1:3908616/91‑1 AATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTAT < 1:622775/91‑1 AATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTAT < 1:622825/91‑1 AATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTAT < 1:3229340/91‑1 ATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATA < 1:2602005/91‑1 TTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATAT < 1:2272541/91‑1 TGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATT < 1:980014/91‑1 TGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATT < 1:980056/91‑1 GCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTT < 1:3643439/91‑1 AACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAAT < 1:257994/91‑1 CATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAG < 1:661988/91‑1 TTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTG < 1:2420113/91‑1 ACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGTG < 1:4146145/91‑1 TATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTT > 1:2633062/1‑91 ATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATA < 1:3105587/91‑1 ATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATA < 1:3105461/91‑1 ATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCA > 1:320522/1‑91 TCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTG > 1:1292120/1‑91 CACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGT > 1:2627994/1‑91 CACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGT < 1:1447597/91‑1 CACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGT > 1:1036693/1‑91 CACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGT < 1:1447740/91‑1 ACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTA < 1:3998130/91‑1 ACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAAT < 1:2097719/91‑1 ACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAAT < 1:141463/91‑1 ACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAAT < 1:3156243/91‑1 CTATATTTTGTCTAGATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATG > 1:1806032/1‑91 CTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATG > 1:1395068/1‑91 TATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGT > 1:276123/1‑91 ATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTG > 1:1411006/1‑91 TATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGT < 1:1634871/91‑1 TATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGT < 1:212934/91‑1 TATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGT > 1:1240716/1‑91 TATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGT < 1:69411/91‑1 TATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGT < 1:2186309/91‑1 TATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGT > 1:1392090/1‑91 TATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGT < 1:1402505/91‑1 TATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGT < 1:3885092/91‑1 TATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGT > 1:3584940/1‑91 ATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTT > 1:2079290/1‑91 ATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTT < 1:3938337/91‑1 TTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTT < 1:470470/91‑1 TTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTT < 1:2467647/91‑1 TTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTT < 1:2467806/91‑1 TTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTTT > 1:464830/1‑91 TTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTTTG > 1:703628/1‑91 CACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2661699‑2661803‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atatcacactatatttTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTTTG < USA300TCH1516_ALE/2661815‑2661726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |