| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2674533 = | 95 (0.970) | 14 (0.160) | 6/140 | NT | 16.2% | intergenic (‑45/+256) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP |
| ? | USA300TCH1516_ALE | 2674588 = | 62 (0.720) | intergenic (‑100/+201) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP | |||||
ATAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2674630‑2674533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatgcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCAT > USA300TCH1516_ALE/2674588‑2674677 ATAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCA < 1:412015/91‑1ATAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCA < 1:411757/91‑1 TAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCAT > 1:1257104/1‑91 TAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCAT > 1:2710130/1‑91 ATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGC < 1:3405108/91‑1 TAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCC < 1:3987285/91‑1 TAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCC < 1:3986979/91‑1 AGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCT < 1:2443701/91‑1 AGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCT < 1:42394/91‑1 GCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTG < 1:3665778/91‑1 CTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGC > 1:1513960/1‑91 ATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACC < 1:3116576/91‑1 GCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACA > 1:2998638/1‑91 CAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACAT > 1:876380/1‑91 CAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACAT > 1:1738949/1‑91 CAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACAT > 1:2857983/1‑91 CAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACAT > 1:1739403/1‑91 AAACAACCGCACTATGGGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATA > 1:1160182/1‑91 AAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATA > 1:409910/1‑91 AAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATA > 1:4040085/1‑91 AAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATA > 1:9886/1‑91 AACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATAT > 1:3447608/1‑91 AACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATAT > 1:3447396/1‑91 AACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATAT > 1:251628/1‑91 ACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATT > 1:567295/1‑91 GCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTT > 1:1667443/1‑91 CCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTA < 1:2214571/91‑1 TGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATC < 1:2127031/91‑1 GCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCA > 1:2946773/1‑91 GCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCA < 1:4128481/91‑1 GCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCA > 1:816075/1‑91 CATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCAT > 1:2733481/1‑91 ATAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2674630‑2674533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatgcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCAT > USA300TCH1516_ALE/2674588‑2674677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |