| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2674533 = | 95 (0.970) | 14 (0.160) | 6/140 | NT | 16.2% | intergenic (‑45/+256) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP |
| ? | USA300TCH1516_ALE | 2674588 = | 62 (0.720) | intergenic (‑100/+201) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP | |||||
Only 100 of 126 total aligned reads displayed.
ATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAG > USA300TCH1516_ALE/2674443‑2674623 | atgataaaattgtgaaaaagttgttgaaaacgcttttacaaatatgtataatagctatgaattagatatcacttgcgtgttactggtaatg > 1:2733481‑M1/91‑91 (MQ=255)aTGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAg > 1:2629314/1‑91 (MQ=255)aTGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAg > 1:1715355/1‑91 (MQ=255)aTGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAg < 1:2762267/91‑1 (MQ=255) tgataaaattgtgaaaaagttgttgaaaacgcttttacaaatatgtataatagctatgaattagatatcacttgcgtgttactggtaatGc > 1:816075‑M1/90‑91 (MQ=255) tgataaaattgtgaaaaagttgttgaaaacgcttttacaaatatgtataatagctatgaattagatatcacttgcgtgttactggtaatGc > 1:2946773‑M1/90‑91 (MQ=255) gCTTTACCGATGCGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCa < 1:3764056/91‑1 (MQ=255) gCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCa < 1:1103441/91‑1 (MQ=255) taaaattgtgaaaaagttgttgaaaacgcttttacaaatatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAgg < 1:2214571‑M1/5‑1 (MQ=255) ttACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGc > 1:3809935/1‑91 (MQ=255) aaaattgtgaaaaagttgttgaaaacgcttttacaaatatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGc > 1:1667443‑M1/86‑91 (MQ=255) tACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCa > 1:1120569/1‑91 (MQ=255) aCCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCAt < 1:756844/91‑1 (MQ=255) ccGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATg > 1:2262041/1‑91 (MQ=255) ccGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATg > 1:1224577/1‑91 (MQ=255) ccGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATg > 1:2263912/1‑91 (MQ=255) gATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGaa < 1:1643031/91‑1 (MQ=255) gATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGaa < 1:2889683/91‑1 (MQ=255) aTACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGaac > 1:2834787/1‑91 (MQ=255) tACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGaaca < 1:4063143/91‑1 (MQ=255) gTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGaacaaac < 1:1792706/91‑1 (MQ=255) aaTTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGAc > 1:3940551/1‑91 (MQ=255) aaTTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGAc > 1:2678179/1‑91 (MQ=255) aaTTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGAc > 1:919560/1‑91 (MQ=255) gTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTAtt > 1:162452/1‑91 (MQ=255) tCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATtc < 1:1143653/91‑1 (MQ=255) tCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATtc > 1:2200684/1‑91 (MQ=255) cAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATtctc < 1:41132/91‑1 (MQ=255) aaaCAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCa < 1:956424/91‑1 (MQ=255) aaCAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCAt > 1:1708270/1‑91 (MQ=255) aaCAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCAt > 1:481819/1‑91 (MQ=255) aCAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATa > 1:2991045/1‑91 (MQ=255) cAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAg < 1:1876532/91‑1 (MQ=255) aTTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTg < 1:628037/91‑1 (MQ=255) tttCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGc < 1:1590290/91‑1 (MQ=255) tttCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGc < 1:3169137/91‑1 (MQ=255) tttCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGc < 1:2984246/91‑1 (MQ=255) tttCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGc < 1:2983528/91‑1 (MQ=255) tttCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGc < 1:2983413/91‑1 (MQ=255) ttCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCg > 1:3514068/1‑91 (MQ=255) tCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCgg > 1:2395048/1‑91 (MQ=255) tCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCgg > 1:2808642/1‑91 (MQ=255) cTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgt > 1:3222446/1‑91 (MQ=255) cTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgt < 1:238669/91‑1 (MQ=255) ttAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgtt < 1:2146161/91‑1 (MQ=255) ttAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgtt < 1:192148/91‑1 (MQ=255) tAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttg > 1:118836/1‑91 (MQ=255) tAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttg > 1:3381697/1‑91 (MQ=255) tAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttg > 1:3922002/1‑91 (MQ=255) aatatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttgt > 1:567295‑M1/51‑91 (MQ=255) aaaCATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttgt > 1:1482555/1‑91 (MQ=255) atatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttgtt > 1:251628‑M1/50‑91 (MQ=255) atatgtataatagctatgaattagatatcacttgcgtgttactggtaaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttgtt > 1:3447608‑M1/50‑91 (MQ=255) aaCATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttgtt < 1:797484/91‑1 (MQ=255) aaCATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttgtt < 1:797602/91‑1 (MQ=255) tatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGttt > 1:409910‑M1/49‑91 (MQ=255) tatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGttt > 1:4040085‑M1/49‑91 (MQ=255) tatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCCCATAGTGCGGTTGttt > 1:1160182‑M1/49‑91 (MQ=255) cATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACACGACTATTCTCATAGTGCGGTTGTTTg < 1:2123102/91‑1 (MQ=255) atgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTg > 1:1738949‑M1/48‑91 (MQ=255) atgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTg > 1:876380‑M1/48‑91 (MQ=255) atgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTg > 1:2857983‑M1/48‑91 (MQ=255) atgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTg > 1:1739403‑M1/48‑91 (MQ=255) tataAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCt < 1:2904831/91‑1 (MQ=255) taAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCa > 1:2491295/1‑91 (MQ=255) taAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCa < 1:2247897/91‑1 (MQ=255) aCATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGc > 1:2537107/1‑91 (MQ=255) aCATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTACGGTTGTTTGCCCATGc < 1:680652/91‑1 (MQ=255) ccccTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGc > 1:2416735/1‑91 (MQ=255) ccTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCAt > 1:3117249/1‑91 (MQ=255) cTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCAtt > 1:3652458/1‑91 (MQ=255) aTCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAc > 1:2117426/1‑91 (MQ=255) aTCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAc > 1:52189/1‑91 (MQ=255) aTCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAc > 1:2116737/1‑91 (MQ=255) aTCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAc > 1:908221/1‑91 (MQ=255) aTCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAc > 1:1774380/1‑91 (MQ=255) tctcAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAcc < 1:1456172/91‑1 (MQ=255) tctcAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAcc < 1:1150454/91‑1 (MQ=255) tcAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAg < 1:3124944/91‑1 (MQ=255) cAATTTCCGCTGCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGt < 1:3762527/91‑1 (MQ=255) aTTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTaa > 1:3958914/1‑91 (MQ=255) aTTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTaa > 1:215494/1‑91 (MQ=255) ttCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAaca > 1:550981/1‑91 (MQ=255) cGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGc > 1:420335/1‑91 (MQ=255) cGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGc > 1:1488454/1‑91 (MQ=255) cGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGc > 1:717145/1‑91 (MQ=255) gCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCa > 1:4131460/1‑91 (MQ=255) gCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCa > 1:3635142/1‑91 (MQ=255) ccATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTg < 1:3968976/91‑1 (MQ=255) aCAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCt < 1:1138475/91‑1 (MQ=255) aCAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCt > 1:695746/1‑91 (MQ=255) aCAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCt > 1:692718/1‑91 (MQ=255) aCAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCt < 1:327595/91‑1 (MQ=255) aCAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCt < 1:2727230/91‑1 (MQ=255) aaaaaaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTaa < 1:2814749/91‑1 (MQ=255) ggtaatGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAAt < 1:3116576‑M1/85‑1 (MQ=255) aaaaaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAAt > 1:3229325/1‑91 (MQ=255) aGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATa > 1:2429408/1‑91 (MQ=255) aGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATa < 1:2284306/91‑1 (MQ=255) GCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAg > 1:1513960‑M1/1‑91 (MQ=255) | ATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAG > USA300TCH1516_ALE/2674443‑2674623 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |