| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2679952 = | 120 (1.220) | 6 (0.080) | 4/130 | NT | 6.9% | intergenic (+4/+756) | ssaA2_4/USA300HOU_RS13810 | Staphylococcal secretory antigen ssaA2/hypothetical protein |
| ? | USA300TCH1516_ALE | 2680007 = | 64 (0.800) | intergenic (+59/+701) | ssaA2_4/USA300HOU_RS13810 | Staphylococcal secretory antigen ssaA2/hypothetical protein | |||||
ATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2680055‑2679952‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgatagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGC > USA300TCH1516_ALE/2680007‑2680096 ATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGT > 1:416194/1‑91 TACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGA < 1:983504/91‑1 TACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGA > 1:3638851/1‑91 ACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGAT < 1:2137545/91‑1 ACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGAT < 1:2137579/91‑1 ACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGAT > 1:2867941/1‑91 ACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGAT < 1:56298/91‑1 CGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATA < 1:354396/91‑1 CGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATA < 1:354303/91‑1 CGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATA < 1:354205/91‑1 GGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG < 1:502249/91‑1 GGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG < 1:771170/91‑1 GGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG < 1:771535/91‑1 GGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG < 1:1598820/91‑1 GGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG > 1:906362/1‑91 GGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG < 1:2622139/91‑1 GGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG > 1:1045314/1‑91 AATTTGAAGTTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAG > 1:1083996/1‑91 AATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAG < 1:1333493/91‑1 AATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAG < 1:629193/91‑1 AATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAG > 1:2359439/1‑91 AATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAG > 1:343677/1‑91 ATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGT < 1:4087798/91‑1 ATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGT < 1:904498/91‑1 ATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGT < 1:1737588/91‑1 TTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTT < 1:2155088/91‑1 TTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTT > 1:166614/1‑91 GAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTT > 1:651822/1‑91 TATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTATTTTATGAAATTATATTAT > 1:1140097/1‑91 CTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATT > 1:941816/1‑91 CTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCC > 1:1204003/1‑91 ATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGT > 1:3149445/1‑91 ATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGT > 1:3811299/1‑91 ATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGT > 1:3472810/1‑91 TGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTA > 1:1505152/1‑91 TGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTA > 1:3014837/1‑91 TGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTA > 1:3015110/1‑91 TGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTA > 1:695299/1‑91 GATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTAT < 1:1416338/91‑1 GATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTAT < 1:2891452/91‑1 ATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATT < 1:3944655/91‑1 ATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATT < 1:3430654/91‑1 ATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATT < 1:3430234/91‑1 TAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTT < 1:605360/91‑1 AAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCAT > 1:1391655/1‑91 AGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATC > 1:2918392/1‑91 AGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATC > 1:212442/1‑91 GTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCT < 1:1818984/91‑1 TTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTT < 1:3795465/91‑1 TTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTT < 1:1295651/91‑1 TTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTT > 1:1762849/1‑91 TTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTT < 1:1120939/91‑1 TTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTT < 1:1562503/91‑1 TTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTA > 1:1395754/1‑91 TTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTA > 1:514433/1‑91 TTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTA > 1:3876628/1‑91 TTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAG > 1:2977680/1‑91 TATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGC < 1:443872/91‑1 TATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGC < 1:603583/91‑1 TATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGC < 1:3655917/91‑1 TATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGC < 1:3240368/91‑1 TATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGC < 1:3239810/91‑1 TATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGC < 1:3239809/91‑1 ATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2680055‑2679952‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgatagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGC > USA300TCH1516_ALE/2680007‑2680096 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |