BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2679952 =	120 (1.220)	6 (0.080)	4/130	NT	6.9%	intergenic (+4/+756)	ssaA2_4/USA300HOU_RS13810	Staphylococcal secretory antigen ssaA2/hypothetical protein
*	?	USA300TCH1516_ALE	2680007 =	64 (0.800)	6 (0.080)	4/130	NT	6.9%	intergenic (+59/+701)	ssaA2_4/USA300HOU_RS13810	Staphylococcal secretory antigen ssaA2/hypothetical protein

Only 100 of 182 total aligned reads displayed.

TCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTC  >  USA300TCH1516_ALE/2679862‑2680042

tCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCaa                                                                                            <  1:2882207/91‑1 (MQ=255)

gctaaagatgaaataatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaata                                                                                            <  1:3239809‑M1/1‑1 (MQ=255)

gctaaagatgaaataatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaata                                                                                            <  1:603583‑M1/1‑1 (MQ=255)

gctaaagatgaaataatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaata                                                                                            <  1:3240368‑M1/1‑1 (MQ=255)

gacaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaata                                                                                            <  1:3652122‑M1/1‑1 (MQ=255)

gacaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaata                                                                                            <  1:637046‑M1/1‑1 (MQ=255)

gacaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaata                                                                                            <  1:637126‑M1/1‑1 (MQ=255)

gacaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaata                                                                                            <  1:1363084‑M1/1‑1 (MQ=255)

 acaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataa                                                                                           <  1:3702806‑M1/2‑1 (MQ=255)

  taaagatgaaataatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaataaa                                                                                          >  1:1395754‑M1/89‑91 (MQ=255)

  caacaatagtaaatggcgaatagcgattttaaagaaatgtttaagtcagtctatcgtagcgcttagataaattaatatgaaaaaaaataaa                                                                                          <  1:3484197‑M1/3‑1 (MQ=255)

   gAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCaaaaa                                                                                         <  1:1478327/91‑1 (MQ=255)

   gAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCaaaaa                                                                                         >  1:1641363/1‑91 (MQ=255)

   aaagatgaaataatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaataaaa                                                                                         <  1:1562503‑M1/4‑1 (MQ=255)

    aagatgaaataatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaataaaaa                                                                                        <  1:1295651‑M1/5‑1 (MQ=255)

    aagatgaaataatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaataaaaa                                                                                        <  1:3795465‑M1/5‑1 (MQ=255)

    aagatgaaataatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaataaaaa                                                                                        >  1:1762849‑M1/87‑91 (MQ=255)

     aTACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAAc                                                                                       >  1:2228145/1‑91 (MQ=255)

      tACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACt                                                                                      <  1:3390243/91‑1 (MQ=255)

      gatgaaataatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaatAAAAACt                                                                                      >  1:2918392‑M1/85‑91 (MQ=255)

      gatgaaataatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaatAAAAACt                                                                                      >  1:212442‑M1/85‑91 (MQ=255)

       aCAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACtt                                                                                     >  1:3029650/1‑91 (MQ=255)

       aCAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACtt                                                                                     >  1:2296425/1‑91 (MQ=255)

        tagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaatAAAAACTTc                                                                                    <  1:3230443‑M1/9‑1 (MQ=255)

           aataatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaatAAAAACTTCTAt                                                                                 <  1:3944655‑M1/12‑1 (MQ=255)

           aataatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaatAAAAACTTCTAt                                                                                 <  1:3430234‑M1/12‑1 (MQ=255)

            ataatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaatAAAAACTTCTATc                                                                                <  1:2891452‑M1/13‑1 (MQ=255)

             tttATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAGCTATATTTACTAATCAAAAAACTCCTATCa                                                                               >  1:3751516/1‑91 (MQ=255)

             taatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaatAAAAACTTCTATCa                                                                               >  1:3014837‑M1/78‑91 (MQ=255)

             taatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaatAAAAACTTCTATCa                                                                               >  1:1505152‑M1/78‑91 (MQ=255)

               tATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACg                                                                             >  1:2418401/1‑91 (MQ=255)

                aTCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGa                                                                            >  1:747811/1‑91 (MQ=255)

                  cGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAAc                                                                          >  1:1387343/1‑91 (MQ=255)

                  cGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAAc                                                                          <  1:1921541/91‑1 (MQ=255)

                  cGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAAc                                                                          >  1:1807040/1‑91 (MQ=255)

                  cGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAAc                                                                          >  1:2536153/1‑91 (MQ=255)

                    cccATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGc                                                                        <  1:2063095/91‑1 (MQ=255)

                    cccATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGc                                                                        <  1:1052773/91‑1 (MQ=255)

                    cccATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGc                                                                        <  1:515095/91‑1 (MQ=255)

                    cccATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGc                                                                        <  1:2113640/91‑1 (MQ=255)

                     ccATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCt                                                                       >  1:595696/1‑91 (MQ=255)

                     ccATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCt                                                                       <  1:651896/91‑1 (MQ=255)

                         tAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCaa                                                                   <  1:111944/91‑1 (MQ=255)

                            aatacaatacACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAAttt                                                                >  1:2871842/1‑91 (MQ=255)

                             atacaatacaCGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTc                                                               >  1:648711/1‑91 (MQ=255)

                             atacaatacaCGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTc                                                               >  1:3470714/1‑91 (MQ=255)

                             atacaatacaCGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTc                                                               >  1:2462172/1‑91 (MQ=255)

                             atacaatacaCGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTc                                                               >  1:4086378/1‑91 (MQ=255)

                             atacaatacaCGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTc                                                               >  1:924540/1‑91 (MQ=255)

                             atacaatacaCGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTc                                                               >  1:2060606/1‑91 (MQ=255)

                                caatacaCGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTg                                                            <  1:3152130/91‑1 (MQ=255)

                                 aatacaCGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGt                                                           >  1:933613/1‑91 (MQ=255)

                                 aatacaCGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGt                                                           <  1:2458944/91‑1 (MQ=255)

                                   tacaCGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTAt                                                         <  1:2259522/91‑1 (MQ=255)

                                    acacGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATg                                                        >  1:1898008/1‑91 (MQ=255)

                                      acGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCg                                                      <  1:824669/91‑1 (MQ=255)

                                      acGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCg                                                      >  1:514065/1‑91 (MQ=255)

                                      acGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCg                                                      <  1:4034436/91‑1 (MQ=255)

                                        gtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaatAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCgtg                                                    >  1:3474486‑M1/51‑91 (MQ=255)

                                        gtgtACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCgtg                                                    >  1:319501/1‑91 (MQ=255)

                                        gtgtACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCgtg                                                    >  1:3526017/1‑91 (MQ=255)

                                          gtACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGtgtg                                                  >  1:2401504/1‑91 (MQ=255)

                                           tACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGa                                                 <  1:505167/91‑1 (MQ=255)

                                           tACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGa                                                 <  1:1664413/91‑1 (MQ=255)

                                            acggcaatttgaaatttgtagaagtaataatataatttcataaaatAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGAt                                                >  1:3811299‑M1/47‑91 (MQ=255)

                                            aCTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATTAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGAt                                                <  1:3289279/91‑1 (MQ=255)

                                              ggcaatttgaaatttgtagaagtaataatataatttcataaaatAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAg                                              >  1:1204003‑M1/45‑91 (MQ=255)

                                               tcagtccatcgtagcgcttagataaattaatatgaacaaaaatAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGa                                             >  1:1448527‑M1/44‑91 (MQ=255)

                                                 gCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAg                                           >  1:3510205/1‑91 (MQ=255)

                                                 gCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAg                                           >  1:414347/1‑91 (MQ=255)

                                                 gCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAg                                           >  1:415133/1‑91 (MQ=255)

                                                   aaaaaGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGtt                                         <  1:3141079/91‑1 (MQ=255)

                                                      aaGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGttttt                                      >  1:2732491/1‑91 (MQ=255)

                                                       aGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTtttta                                     >  1:2570375/1‑91 (MQ=255)

                                                       aGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTtttta                                     >  1:2625470/1‑91 (MQ=255)

                                                        ggCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTttttat                                    >  1:1048275/1‑91 (MQ=255)

                                                          cagcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTttttattt                                  <  1:4057799/91‑1 (MQ=255)

                                                           agcaCGTAACTTTAACTATATTTACTAATCAAACAACCTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTttttatttt                                 >  1:3306178/1‑91 (MQ=255)

                                                            gcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTttttatttta                                >  1:2280389/1‑91 (MQ=255)

                                                               cGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGa                             >  1:1923657/1‑91 (MQ=255)

                                                               cGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGa                             >  1:437916/1‑91 (MQ=255)

                                                                  aaCTTTAACTATATTTATTAATCAAAAAACTTTTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTATTTATTTTATGAAat                          <  1:3545200/91‑1 (MQ=255)

                                                                  aaCTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAat                          <  1:2363935/91‑1 (MQ=255)

                                                                      ttAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattata                      <  1:2485803/91‑1 (MQ=255)

                                                                      ataatataatttcataaaatAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattata                      >  1:1140097‑M1/21‑91 (MQ=255)

                                                                       tAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatat                     <  1:2819833/91‑1 (MQ=255)

                                                                       tAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatat                     >  1:2631613/1‑91 (MQ=255)

                                                                         aCTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatatta                   <  1:3894874/91‑1 (MQ=255)

                                                                         aCTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatatta                   <  1:1318762/91‑1 (MQ=255)

                                                                         aCTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatatta                   >  1:3668106/1‑91 (MQ=255)

                                                                         aCTATATTTACTAATCAAAAAACTTCTATCACGAACGCTCCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatatta                   <  1:3434272/91‑1 (MQ=255)

                                                                          cTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatattat                  <  1:16123/91‑1 (MQ=255)

                                                                          cTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatattat                  >  1:3620104/1‑91 (MQ=255)

                                                                              atTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACt              >  1:98156/1‑91 (MQ=255)

                                                                               tttACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACtt             >  1:445335/1‑91 (MQ=255)

                                                                                ttACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTc            <  1:2779111/91‑1 (MQ=255)

                                                                                 tACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCt           >  1:841109/1‑91 (MQ=255)

                                                                                    tAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACa        <  1:373394/91‑1 (MQ=255)

                                                                                     aaTCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACaa       <  1:671013/91‑1 (MQ=255)

                                                                                       tCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAAt     <  1:92498/91‑1 (MQ=255)

TCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTC  >  USA300TCH1516_ALE/2679862‑2680042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.