BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2679952 =	120 (1.220)	6 (0.080)	4/130	NT	6.9%	intergenic (+4/+756)	ssaA2_4/USA300HOU_RS13810	Staphylococcal secretory antigen ssaA2/hypothetical protein
*	?	USA300TCH1516_ALE	2680007 =	64 (0.800)	6 (0.080)	4/130	NT	6.9%	intergenic (+59/+701)	ssaA2_4/USA300HOU_RS13810	Staphylococcal secretory antigen ssaA2/hypothetical protein

Only 100 of 153 total aligned reads displayed.

AGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCA  >  USA300TCH1516_ALE/2679917‑2680097

aGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTtttta                                                                                            >  1:2625470/1‑91 (MQ=255)

aGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTtttta                                                                                            >  1:2570375/1‑91 (MQ=255)

 ggCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGCACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTttttat                                                                                           >  1:495615/1‑91 (MQ=255)

 ggCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTttttat                                                                                           >  1:1048275/1‑91 (MQ=255)

 ggCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTttttat                                                                                           <  1:763109/91‑1 (MQ=255)

 cgtagcgcttagataaagtaatatgaacaaaattAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGGGATAGAAGTttttat                                                                                           >  1:3544638‑M1/35‑91 (MQ=255)

   cagcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTttttattt                                                                                         <  1:4057799/91‑1 (MQ=255)

    agcaCGTAACTTTAACTATATTTACTAATCAAACAACCTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTttttatttt                                                                                        >  1:3306178/1‑91 (MQ=255)

     gcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTttttatttta                                                                                       >  1:3113667/1‑91 (MQ=255)

      caCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTtttattttat                                                                                      <  1:1345693/91‑1 (MQ=255)

      caCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTtttattttat                                                                                      >  1:3954970/1‑91 (MQ=255)

       aCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATg                                                                                     >  1:3464981/1‑91 (MQ=255)

        cGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGa                                                                                    >  1:1923657/1‑91 (MQ=255)

        cGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGa                                                                                    >  1:437916/1‑91 (MQ=255)

           aaCTTTAACTATATTTATTAATCAAAAAACTTTTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTATTTATTTTATGAAat                                                                                 <  1:3545200/91‑1 (MQ=255)

           aaCTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAat                                                                                 <  1:2363935/91‑1 (MQ=255)

            aCTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAatt                                                                                >  1:2455237/1‑91 (MQ=255)

               ataatataatttcataaaatAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattata                                                                             >  1:1140097‑M1/21‑91 (MQ=255)

                tAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatat                                                                            <  1:2819833/91‑1 (MQ=255)

                  aCTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatatta                                                                          >  1:3668106/1‑91 (MQ=255)

                  aCTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatatta                                                                          <  1:3894874/91‑1 (MQ=255)

                   cTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatattat                                                                         >  1:3620104/1‑91 (MQ=255)

                   cTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatattat                                                                         >  1:1146184/1‑91 (MQ=255)

                     atatTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATAttatta                                                                       >  1:3711545/1‑91 (MQ=255)

                         ttACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTc                                                                   <  1:2490900/91‑1 (MQ=255)

                         ttACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTc                                                                   <  1:2779125/91‑1 (MQ=255)

                            cTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTAc                                                                >  1:2570383/1‑91 (MQ=255)

                             tAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACa                                                               <  1:373394/91‑1 (MQ=255)

                              aaTCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACaa                                                              <  1:671013/91‑1 (MQ=255)

                                tCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAAt                                                            <  1:92498/91‑1 (MQ=255)

                                      AACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCaaa                                                      >  1:166614‑M1/1‑91 (MQ=255)

                                      AACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCaaa                                                      <  1:2155088‑M1/91‑1 (MQ=255)

                                       ACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAAt                                                     <  1:1737588‑M1/91‑1 (MQ=255)

                                       ACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAAt                                                     <  1:904498‑M1/91‑1 (MQ=255)

                                        cttctatcacacgcatacaggaaattgaagcgttcgtgatagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAAtt                                                    >  1:941816‑M2/51‑91 (MQ=255)

                                        CTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAAtt                                                    >  1:343677‑M1/1‑91 (MQ=255)

                                        CTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAAtt                                                    <  1:1333493‑M1/91‑1 (MQ=255)

                                        CTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAAtt                                                    <  1:629193‑M1/91‑1 (MQ=255)

                                           ctatcacacgcatacaggaaattgaagcgttcgtgatagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGcc                                                 >  1:1204003‑M2/48‑91 (MQ=255)

                                           CTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGcc                                                 <  1:2622139‑M1/91‑1 (MQ=255)

                                           CTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGcc                                                 <  1:1598820‑M1/91‑1 (MQ=255)

                                           CTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGcc                                                 <  1:771170‑M1/91‑1 (MQ=255)

                                           CTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGcc                                                 <  1:771535‑M1/91‑1 (MQ=255)

                                           CTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGcc                                                 >  1:1045314‑M1/1‑91 (MQ=255)

                                            TATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCg                                                <  1:354303‑M1/91‑1 (MQ=255)

                                            TATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCg                                                <  1:354205‑M1/91‑1 (MQ=255)

                                             atcacacgcatacaggaaattgaagcgttcgtgatagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGt                                               >  1:3149445‑M2/46‑91 (MQ=255)

                                             ATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGt                                               <  1:2137579‑M1/91‑1 (MQ=255)

                                             ATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGt                                               <  1:56298‑M1/91‑1 (MQ=255)

                                              TCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTa                                              >  1:3638851‑M1/1‑91 (MQ=255)

                                              TCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTa                                              <  1:983504‑M1/91‑1 (MQ=255)

                                                  gAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTg                                          <  1:24167/91‑1 (MQ=255)

                                                      gCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACg                                      >  1:2887882/1‑91 (MQ=255)

                                                       cTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGt                                     >  1:495899/1‑91 (MQ=255)

                                                         tCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGtat                                   >  1:8499/1‑91 (MQ=255)

                                                         tCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGtat                                   >  1:3390661/1‑91 (MQ=255)

                                                          cAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGtata                                  >  1:1560488/1‑91 (MQ=255)

                                                             tttCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATAttt                               <  1:212945/91‑1 (MQ=255)

                                                             tttCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATAttt                               <  1:749828/91‑1 (MQ=255)

                                                              ttCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATttc                              <  1:268376/91‑1 (MQ=255)

                                                              ttCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATttc                              <  1:268254/91‑1 (MQ=255)

                                                                ccTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATCTCAAATTGCCGTAATTGCCCGTATATttctt                            >  1:1158182/1‑91 (MQ=255)

                                                                 cTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATttcttc                           >  1:2015557/1‑91 (MQ=255)

                                                                 cTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATttcttc                           >  1:2345691/1‑91 (MQ=255)

                                                                 cTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATttcttc                           >  1:2340005/1‑91 (MQ=255)

                                                                  tGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATttcttct                          >  1:3114233/1‑91 (MQ=255)

                                                                   gTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATttcttctt                         <  1:53904/91‑1 (MQ=255)

                                                                    tATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATttcttcttc                        >  1:2560859/1‑91 (MQ=255)

                                                                     aTGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCa                       <  1:1858491/91‑1 (MQ=255)

                                                                       gCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAAc                     <  1:4114801/91‑1 (MQ=255)

                                                                       gCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAAc                     <  1:4053596/91‑1 (MQ=255)

                                                                       gCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAAc                     <  1:1595459/91‑1 (MQ=255)

                                                                       gCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAAc                     <  1:1262893/91‑1 (MQ=255)

                                                                       gCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAAc                     >  1:1149660/1‑91 (MQ=255)

                                                                       gCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAAc                     >  1:1386974/1‑91 (MQ=255)

                                                                         gtgtGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACta                   <  1:3804739/91‑1 (MQ=255)

                                                                          tgtgATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACtat                  >  1:1819015/1‑91 (MQ=255)

                                                                          tgtgATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACtat                  >  1:1819523/1‑91 (MQ=255)

                                                                            tgatagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACtatta                >  1:3014837‑M2/15‑91 (MQ=255)

                                                                            tgatagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACtatta                >  1:1505152‑M2/15‑91 (MQ=255)

                                                                            tgatagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACtatta                >  1:695299‑M2/15‑91 (MQ=255)

                                                                             gatagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACtattat               <  1:2891452‑M2/78‑1 (MQ=255)

                                                                             gatagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACtattat               <  1:1416338‑M2/78‑1 (MQ=255)

                                                                              atagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTattatt              <  1:3430234‑M2/79‑1 (MQ=255)

                                                                              atagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTattatt              <  1:3430654‑M2/79‑1 (MQ=255)

                                                                              atagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTattatt              <  1:3944655‑M2/79‑1 (MQ=255)

                                                                               tagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTAttt             <  1:605360‑M2/80‑1 (MQ=255)

                                                                                  aagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCAt          >  1:1391655‑M2/9‑91 (MQ=255)

                                                                                   agtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATc         >  1:212442‑M2/8‑91 (MQ=255)

                                                                                    gtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCt        <  1:1818984‑M2/85‑1 (MQ=255)

                                                                                     tttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCtt       <  1:1120939‑M2/86‑1 (MQ=255)

                                                                                     tttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCtt       <  1:3795465‑M2/86‑1 (MQ=255)

                                                                                     tttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCtt       <  1:1295651‑M2/86‑1 (MQ=255)

                                                                                       tttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTa     >  1:514433‑M2/4‑91 (MQ=255)

                                                                                       tttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTa     >  1:3876628‑M2/4‑91 (MQ=255)

                                                                                        ttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAg    >  1:2977680‑M2/3‑91 (MQ=255)

                                                                                         tATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGc   <  1:443872‑M2/90‑1 (MQ=255)

                                                                                         tATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGc   <  1:3239810‑M2/90‑1 (MQ=255)

                                                                                         tATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGc   <  1:3239809‑M2/90‑1 (MQ=255)

                                                                                          attttatGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTATTTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCa  >  1:4136147/1‑91 (MQ=255)

AGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCA  >  USA300TCH1516_ALE/2679917‑2680097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.