| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2681424 | 88 (0.890) | 8 (0.100) | 6/130 | NT | 9.3% | intergenic (‑459/+120) | USA300HOU_RS13810/mvaA | hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase |
| ? | USA300TCH1516_ALE | = 2681449 | 84 (1.050) | intergenic (‑484/+95) | USA300HOU_RS13810/mvaA | hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase | |||||
CAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2681320‑2681424‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacttctatcac‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACG < USA300TCH1516_ALE/2681449‑2681361 CAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAA > 1:1599438/1‑91 ATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAA > 1:1922969/1‑91 ATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAA > 1:1922875/1‑91 TAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAA > 1:1647378/1‑91 AAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAA < 1:838744/91‑1 CTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTA > 1:893199/1‑91 CTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTA > 1:891506/1‑91 CTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTA < 1:2626588/91‑1 CTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTA > 1:1980583/1‑91 TCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTAT < 1:762657/91‑1 GTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCA < 1:2128717/91‑1 GAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCATACAGGAAATTGAAG < 1:1410990/91‑1 TCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCG < 1:3107868/91‑1 CGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGT < 1:3770899/91‑1 CTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGAT < 1:88118/91‑1 CTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGAT < 1:3105594/91‑1 CATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAG < 1:2421365/91‑1 TGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAA < 1:1709436/91‑1 TGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAA < 1:2848810/91‑1 AAAAACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACT < 1:1794639/91‑1 AAAAACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACT < 1:1793286/91‑1 AAAAACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACT > 1:3511032/1‑91 AAACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTC > 1:3009255/1‑91 AACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTATATAACTTCT > 1:3975851/1‑91 AACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTACATAACTTCT > 1:3975818/1‑91 AACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCT > 1:1316069/1‑91 AACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCT < 1:865258/91‑1 AACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCT > 1:343911/1‑91 AACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCT > 1:2217745/1‑91 AACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCT > 1:2150871/1‑91 AACTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCT > 1:1321545/1‑91 CTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTC < 1:3687827/91‑1 CTTCTATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTC > 1:524433/1‑91 TCTATCAC‑‑ACGCATATAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAGTCAGTCTAATGAAAAGTAAATAACTTCTTCAT > 1:3529045/1‑91 ATCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAG > 1:4123285/1‑91 TCAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGA < 1:1277199/91‑1 CAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGAC < 1:287362/91‑1 CAC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGAC < 1:287345/91‑1 AC‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACG < 1:152203/91‑1 CAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2681320‑2681424‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacttctatcac‑‑ACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACG < USA300TCH1516_ALE/2681449‑2681361 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |