BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2681424	88 (0.890)	8 (0.100)	6/130	NT	9.3%	intergenic (‑459/+120)	USA300HOU_RS13810/mvaA	hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase
*	?	USA300TCH1516_ALE	= 2681449	84 (1.050)	8 (0.100)	6/130	NT	9.3%	intergenic (‑484/+95)	USA300HOU_RS13810/mvaA	hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase

Only 100 of 124 total aligned reads displayed.

TTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCA  >  USA300TCH1516_ALE/2681359‑2681539

ttCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCgt                                                                                            >  1:3030769/1‑91 (MQ=255)

  cGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgt                                                                                          <  1:152203‑M2/91‑3 (MQ=255)

   gTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtg                                                                                         <  1:287345‑M2/91‑4 (MQ=255)

   gTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtg                                                                                         <  1:287362‑M2/91‑4 (MQ=255)

    tctcATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtga                                                                                        <  1:1277199‑M2/91‑5 (MQ=255)

     ctcATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgat                                                                                       >  1:4123285‑M2/1‑86 (MQ=255)

          gaagaaGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaag                                                                                  >  1:524433‑M2/1‑81 (MQ=255)

          gaagaaGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaag                                                                                  <  1:3687827‑M2/91‑11 (MQ=255)

            agaagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagtt                                                                                >  1:2217745‑M2/1‑79 (MQ=255)

            agaagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagtt                                                                                >  1:343911‑M2/1‑79 (MQ=255)

            agaagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagtt                                                                                >  1:1321545‑M2/1‑79 (MQ=255)

            agaagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagtt                                                                                >  1:1316069‑M2/1‑79 (MQ=255)

            agaagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagtt                                                                                <  1:865258‑M2/91‑13 (MQ=255)

            agaagTTATATACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagtt                                                                                >  1:3975851‑M2/1‑79 (MQ=255)

             gaagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagttt                                                                               >  1:3009255‑M2/1‑78 (MQ=255)

               agTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagttttt                                                                             >  1:3511032‑M2/1‑76 (MQ=255)

               agTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagttttt                                                                             <  1:1793286‑M2/91‑16 (MQ=255)

               agTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagttttt                                                                             <  1:1794639‑M2/91‑16 (MQ=255)

                 ttATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAt                                                                           >  1:2453072/1‑91 (MQ=255)

                  tATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAtt                                                                          <  1:1098107/91‑1 (MQ=255)

                   aTTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAttt                                                                         >  1:2633682/1‑91 (MQ=255)

                   aTTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAttt                                                                         >  1:2721855/1‑91 (MQ=255)

                    tttACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAtttt                                                                        >  1:2101267/1‑91 (MQ=255)

                     ttACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAttttt                                                                       <  1:314988/91‑1 (MQ=255)

                     ttACTTTTCATCAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAttttt                                                                       <  1:3762736/91‑1 (MQ=255)

                      tACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTg                                                                      >  1:3702880/1‑91 (MQ=255)

                       aCTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGt                                                                     <  1:3521161/91‑1 (MQ=255)

                        cTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGtt                                                                    >  1:2043322/1‑91 (MQ=255)

                         ttttCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTc                                                                   <  1:3765327/91‑1 (MQ=255)

                          tttCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCa                                                                  <  1:2900358/91‑1 (MQ=255)

                            tCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCata                                                                <  1:1323083/91‑1 (MQ=255)

                            tCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCata                                                                >  1:1782219/1‑91 (MQ=255)

                            tCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCata                                                                <  1:3553179/91‑1 (MQ=255)

                             cATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCatat                                                               >  1:2684803/1‑91 (MQ=255)

                             cATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGGGTGATAGAAGTTTTTATTTTTGTTCatat                                                               >  1:1919146/1‑91 (MQ=255)

                              aTTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATAtt                                                              <  1:2925977/91‑1 (MQ=255)

                              aTTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATAtt                                                              <  1:2795741/91‑1 (MQ=255)

                                  gACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAAtt                                                          >  1:4028198/1‑91 (MQ=255)

                                   aCTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAAttt                                                         >  1:1850203/1‑91 (MQ=255)

                                   aCTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAAttt                                                         >  1:4133494/1‑91 (MQ=255)

                                   aCTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAAttt                                                         >  1:969242/1‑91 (MQ=255)

                                   aCTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAAttt                                                         >  1:1850178/1‑91 (MQ=255)

                                       aTTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCt                                                     >  1:3802530/1‑91 (MQ=255)

                                        tttACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTa                                                    >  1:3845119/1‑91 (MQ=255)

                                        tttACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTa                                                    >  1:349742/1‑91 (MQ=255)

                                        tttACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTa                                                    >  1:652269/1‑91 (MQ=255)

                                           aCTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAgc                                                 >  1:2726669/1‑91 (MQ=255)

                                           aCTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAgc                                                 >  1:1350338/1‑91 (MQ=255)

                                            cTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAgcg                                                >  1:1358782/1‑91 (MQ=255)

                                            cTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAgcg                                                <  1:636027/91‑1 (MQ=255)

                                            cTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAgcg                                                <  1:3026813/91‑1 (MQ=255)

                                              aaTCGAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCt                                              >  1:2062099/1‑91 (MQ=255)

                                              aaTCGAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCt                                              >  1:2062241/1‑91 (MQ=255)

                                               aTCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTa                                             >  1:2094435/1‑91 (MQ=255)

                                                 cAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACg                                           >  1:46173/1‑91 (MQ=255)

                                                  aaaaaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGa                                          <  1:3001965/91‑1 (MQ=255)

                                                  aaaaaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGa                                          <  1:756816/91‑1 (MQ=255)

                                                   aaaaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGAt                                         >  1:2342108/1‑91 (MQ=255)

                                                   aaaaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGAt                                         >  1:2342191/1‑91 (MQ=255)

                                                    aaaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATg                                        >  1:2062080/1‑91 (MQ=255)

                                                         ttCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttca                                   <  1:1709436‑M2/91‑58 (MQ=255)

                                                         ttCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttca                                   <  1:2848810‑M2/91‑58 (MQ=255)

                                                           cTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGCTGgacagac                                 >  1:3731644/1‑91 (MQ=255)

                                                           cTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgac                                 >  1:343162/1‑91 (MQ=255)

                                                            tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgact                                >  1:1551529/1‑91 (MQ=255)

                                                            tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgact                                <  1:1818906/91‑1 (MQ=255)

                                                            tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgact                                <  1:1991641/91‑1 (MQ=255)

                                                            tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgact                                <  1:1818920/91‑1 (MQ=255)

                                                             aTCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgag                               <  1:3105594‑M2/91‑62 (MQ=255)

                                                             aTCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgag                               <  1:88118‑M2/91‑62 (MQ=255)

                                                             aTCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACtt                               <  1:1518004/91‑1 (MQ=255)

                                                              tCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTa                              <  1:3886732/91‑1 (MQ=255)

                                                              tCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTa                              <  1:1524975/91‑1 (MQ=255)

                                                              tCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTa                              <  1:2444634/91‑1 (MQ=255)

                                                               cACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTaa                             <  1:4009769/91‑1 (MQ=255)

                                                               cACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTaa                             <  1:2343839/91‑1 (MQ=255)

                                                                aCGAACGCTTCAATTTCCTGTATGCGTgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacg                            <  1:3770899‑M2/91‑65 (MQ=255)

                                                                 cGAACGCTTCAATTTCCTGTATGCGTgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacga                           <  1:3107868‑M2/91‑66 (MQ=255)

                                                                   aaCGCTTCAATTTCCTGTATGCGTGTGATGGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACtt                         <  1:3324599/91‑1 (MQ=255)

                                                                     cGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACtttt                       <  1:2806321/91‑1 (MQ=255)

                                                                       cTTCAATTTCCTGTATGCGTtcgtgatagaagttttttgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacgaattc                     <  1:1410990‑M2/91‑72 (MQ=255)

                                                                       cTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCt                     <  1:2495929/91‑1 (MQ=255)

                                                                       cTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCt                     <  1:2495263/91‑1 (MQ=255)

                                                                       cTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCt                     <  1:2752741/91‑1 (MQ=255)

                                                                          cAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTa                  >  1:3928927/1‑91 (MQ=255)

                                                                          cAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTa                  <  1:2103163/91‑1 (MQ=255)

                                                                          cAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTa                  >  1:1088808/1‑91 (MQ=255)

                                                                            aTTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTaaa                <  1:2969854/91‑1 (MQ=255)

                                                                            aTTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTaaa                <  1:637072/91‑1 (MQ=255)

                                                                            aTTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTaaa                >  1:1968999/1‑91 (MQ=255)

                                                                             tttCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTaaaa               <  1:3137005/91‑1 (MQ=255)

                                                                             tttCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTaaaa               <  1:3737503/91‑1 (MQ=255)

                                                                               tCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATc             >  1:1904539/1‑91 (MQ=255)

                                                                               tCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATc             >  1:1904437/1‑91 (MQ=255)

                                                                               tCCTGTATGCGTGTGATAGAAGTTTTTATTTTTCTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATc             <  1:3521104/91‑1 (MQ=255)

                                                                                 cTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGc           >  1:3521023/1‑91 (MQ=255)

                                                                                     aTGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTAtt       <  1:3833866/91‑1 (MQ=255)

                                                                                      tGCGTGTTATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTc      <  1:2071577/91‑1 (MQ=255)

                                                                                          tgtgATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCa  <  1:545136/91‑1 (MQ=255)

                                                                                          tgtgATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCa  <  1:650156/91‑1 (MQ=255)

TTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCA  >  USA300TCH1516_ALE/2681359‑2681539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.