| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2693379 | 85 (0.860) | 14 (0.170) | 8/136 | NT | 16.0% | intergenic (+50/+306) | mtrR/rocA | HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase |
| ? | USA300TCH1516_ALE | = 2693404 | 75 (0.900) | intergenic (+75/+281) | mtrR/rocA | HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase | |||||
CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2693278‑2693379‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacgatagtAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTA < USA300TCH1516_ALE/2693404‑2693317 CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑A > 1:700300/1‑91CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑A > 1:271433/1‑91 AAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAA < 1:3917660/91‑1 AAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAA < 1:1862259/91‑1 AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAA > 1:1214052/1‑91 AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAA > 1:691856/1‑91 AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAA < 1:1722933/91‑1 AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAA > 1:2100692/1‑91 GATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAA < 1:911646/91‑1 GATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAA < 1:911503/91‑1 GATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAA > 1:3446314/1‑91 ATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGA < 1:2307383/91‑1 TTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGAT > 1:1643037/1‑91 TGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATA > 1:923005/1‑91 TGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATA < 1:2811890/91‑1 GATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAG < 1:308337/91‑1 GATAACATTTTCCATAGATTAATCAATATTAAGAGGAAATAGTAGATGAGAAACTCCTGAGCGTTAACAACATTCATAAT‑AACAACGATAG > 1:1398669/1‑91 ATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT < 1:789441/91‑1 ATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT < 1:2851617/91‑1 ATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATT < 1:1451231/91‑1 ATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATT < 1:1451395/91‑1 TCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGAATTCATTAACGTG < 1:3145475/91‑1 TCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGAATTCATTAACGTG < 1:3145521/91‑1 TTAAGATTAGATAATAGATGAAAAACTCATGAGCATTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACAC < 1:712341/91‑1 TTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACAC < 1:712477/91‑1 TTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACAC < 1:3338148/91‑1 TAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACT < 1:2160886/91‑1 AAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTA < 1:913212/91‑1 GATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATC < 1:1675325/91‑1 ATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATC < 1:2777698/91‑1 TTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCG < 1:1553260/91‑1 AATAGTAGATGAGAAACTCATGAGCGTTACCCACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTT < 1:1466113/91‑1 AATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTT < 1:1466496/91‑1 AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTAT > 1:3274374/1‑91 AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTAT > 1:3274459/1‑91 AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTAT > 1:3274832/1‑91 AAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTT > 1:176249/1‑91 AAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTT < 1:397128/91‑1 AAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTT > 1:2552089/1‑91 AAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTT > 1:2551733/1‑91 AAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTT > 1:2331620/1‑91 ACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAA < 1:1622380/91‑1 ACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAA > 1:892074/1‑91 TAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTT < 1:2231119/91‑1 TAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTT > 1:1396983/1‑91 TAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTT > 1:1954440/1‑91 AGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTA > 1:223827/1‑91 AGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTA > 1:1346174/1‑91 CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2693278‑2693379‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacgatagtAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTA < USA300TCH1516_ALE/2693404‑2693317 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |