BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2693379	85 (0.860)	14 (0.170)	8/136	NT	16.0%	intergenic (+50/+306)	mtrR/rocA	HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase
*	?	USA300TCH1516_ALE	= 2693404	75 (0.900)	14 (0.170)	8/136	NT	16.0%	intergenic (+75/+281)	mtrR/rocA	HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase

Only 100 of 159 total aligned reads displayed.

ATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACT  >  USA300TCH1516_ALE/2693289‑2693469

aTAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT                                                                                            <  1:789441‑M1/91‑1 (MQ=255)

 tAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAgtg                                                                                           <  1:3471439/91‑1 (MQ=255)

   aCATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACAAACATTCATAAT‑AAAAACGATAGTGTa                                                                                         <  1:452838/91‑1 (MQ=255)

     aTTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTaca                                                                                       >  1:3153877/1‑91 (MQ=255)

     aTTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTaca                                                                                       >  1:1382391/1‑91 (MQ=255)

         tCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGtt                                                                                   <  1:3564633/91‑1 (MQ=255)

          ccATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTa                                                                                  >  1:1164759/1‑91 (MQ=255)

           cATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTaa                                                                                 >  1:927810/1‑91 (MQ=255)

           cATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTaa                                                                                 >  1:2954320/1‑91 (MQ=255)

           cATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTaa                                                                                 >  1:478211/1‑91 (MQ=255)

            aTAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAAt                                                                                <  1:3898784/91‑1 (MQ=255)

              aGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGa                                                                              <  1:2404949/91‑1 (MQ=255)

              aGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGa                                                                              <  1:2405030/91‑1 (MQ=255)

               gATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGaa                                                                             >  1:704683/1‑91 (MQ=255)

               gATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGaa                                                                             <  1:2854400/91‑1 (MQ=255)

               gATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGaa                                                                             <  1:2854615/91‑1 (MQ=255)

                aTTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTagtacacgaattcatt                                                                            <  1:1451231‑M1/91‑17 (MQ=255)

                aTTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAAt                                                                            >  1:3886853/1‑91 (MQ=255)

                aTTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAAt                                                                            >  1:1104943/1‑91 (MQ=255)

                 ttAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAAtt                                                                           <  1:318225/91‑1 (MQ=255)

                   aaTCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCg                                                                         <  1:1385196/91‑1 (MQ=255)

                     tCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTgtacacgaattcattaacgtg                                                                       <  1:3145475‑M1/91‑22 (MQ=255)

                     tCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCgtg                                                                       >  1:2058652/1‑91 (MQ=255)

                       aaTATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGta                                                                     >  1:1254853/1‑91 (MQ=255)

                        atatTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGtac                                                                    <  1:1536102/91‑1 (MQ=255)

                         tatTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAGCGATAGTGTACACGTTAATGAATTCGTGtact                                                                   >  1:3537582/1‑91 (MQ=255)

                         tatTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGtact                                                                   <  1:282798/91‑1 (MQ=255)

                         tatTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGtact                                                                   <  1:277984/91‑1 (MQ=255)

                           ttAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTagtacacgaattcattaacgtgtacac                                                                 <  1:3338148‑M1/91‑28 (MQ=255)

                           ttAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTagtacacgaattcattaacgtgtacac                                                                 <  1:712477‑M1/91‑28 (MQ=255)

                            tAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTagtacacgaattcattaacgtgtacact                                                                <  1:2160886‑M1/91‑29 (MQ=255)

                            tAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTact                                                                >  1:1346174‑M2/1‑88 (MQ=255)

                             aaGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTacta                                                               >  1:1396983‑M2/1‑87 (MQ=255)

                             aaGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTacta                                                               >  1:1954440‑M2/1‑87 (MQ=255)

                               gATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTagtacacgaattcattaacgtgtacactatc                                                             <  1:1675325‑M1/91‑32 (MQ=255)

                                aTTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTagtacacgaattcattaacgtgtacactatc                                                             <  1:2777698‑M1/91‑32 (MQ=255)

                                 ttAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTagtacacgaattcattaacgtgtacactatcg                                                            <  1:1553260‑M1/91‑33 (MQ=255)

                                 ttAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTactatcgt                                                           >  1:892074‑M2/1‑83 (MQ=255)

                                 ttAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTactatcgt                                                           <  1:1622380‑M2/91‑9 (MQ=255)

                                   aaaTAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTactatcgttt                                                         <  1:397128‑M2/91‑11 (MQ=255)

                                   aaaTAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTactatcgttt                                                         >  1:2331620‑M2/1‑81 (MQ=255)

                                   aaaTAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTactatcgttt                                                         >  1:176249‑M2/1‑81 (MQ=255)

                                   aaaTAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTactatcgttt                                                         >  1:2551733‑M2/1‑81 (MQ=255)

                                    aaTAGTAGATGAGAAACTCATGAGCGTTACCCACATTCATAATAAAAAACGATAGTagtacacgaattcattaacgtgtacactatcgttt                                                         <  1:1466113‑M1/91‑36 (MQ=255)

                                     aTAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTactatcgttttt                                                       >  1:3274832‑M2/1‑79 (MQ=255)

                                      tagtagATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGtttttt                                                      >  1:1189930/1‑91 (MQ=255)

                                      tagtagATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGtttttt                                                      >  1:4097942/1‑91 (MQ=255)

                                       agtagATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTttttta                                                     <  1:2838890/91‑1 (MQ=255)

                                          agATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttattt                                                  <  1:1240056/91‑1 (MQ=255)

                                          agATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttattt                                                  >  1:3445480/1‑91 (MQ=255)

                                           gATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttatttt                                                 <  1:3744200/91‑1 (MQ=255)

                                             tGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttattttta                                               >  1:2746823/1‑91 (MQ=255)

                                              gagaAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTttttatttttat                                              >  1:2622249/1‑91 (MQ=255)

                                                gaAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCg                                            <  1:1886590/91‑1 (MQ=255)

                                                gaAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCg                                            <  1:3652534/91‑1 (MQ=255)

                                                    cTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCt                                        <  1:3067055/91‑1 (MQ=255)

                                                    cTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCt                                        >  1:3147012/1‑91 (MQ=255)

                                                      cATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTa                                      >  1:1061981/1‑91 (MQ=255)

                                                      cATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTa                                      >  1:4018114/1‑91 (MQ=255)

                                                         gAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCg                                   <  1:2651676/91‑1 (MQ=255)

                                                         gAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCg                                   <  1:680895/91‑1 (MQ=255)

                                                         gAGCGTTACCAACATACATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACCACTATCGTTTTTTATTTTTATCGTGCTTATCg                                   >  1:3537732/1‑91 (MQ=255)

                                                           gCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCt                                 >  1:1211744/1‑91 (MQ=255)

                                                            cGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTa                                <  1:1861157/91‑1 (MQ=255)

                                                             gTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTAt                               <  1:135795/91‑1 (MQ=255)

                                                                aCCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaa                            >  1:3749841/1‑91 (MQ=255)

                                                                  cAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaaaa                          >  1:3389735/1‑91 (MQ=255)

                                                                  cAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaaaa                          >  1:3786582/1‑91 (MQ=255)

                                                                  cAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTACCGCTATTaaaa                          >  1:3766199/1‑91 (MQ=255)

                                                                    aCATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTATATCGTGCTTATCGCTATTAAaaca                        >  1:3847465/1‑91 (MQ=255)

                                                                     cATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAaacaa                       <  1:100930/91‑1 (MQ=255)

                                                                      aTTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAaacaac                      >  1:170583/1‑91 (MQ=255)

                                                                       ttCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACt                     >  1:2192875/1‑91 (MQ=255)

                                                                        tCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTg                    <  1:927284/91‑1 (MQ=255)

                                                                        tCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTg                    >  1:1787488/1‑91 (MQ=255)

                                                                           taat‑aaAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATa                 >  1:1596551/1‑91 (MQ=255)

                                                                           taat‑aaAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATa                 >  1:1466688/1‑91 (MQ=255)

                                                                             at‑aaAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATaca               <  1:4112226/91‑1 (MQ=255)

                                                                              t‑aaAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacac              <  1:1139152/91‑1 (MQ=255)

                                                                                aaaaaCGATAGTagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactat             >  1:3274832‑M1/1‑12 (MQ=255)

                                                                                aaaaaCGATAGTagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactat             >  1:3274459‑M1/1‑12 (MQ=255)

                                                                                aaaaaCGATAGTagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactat             >  1:3274374‑M1/1‑12 (MQ=255)

                                                                                  aaaCGATAGTagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactattt           >  1:2331620‑M1/1‑10 (MQ=255)

                                                                                  aaaCGATAGTagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactattt           >  1:2552089‑M1/1‑10 (MQ=255)

                                                                                  aaaCGATAGTGTACACGTTAATGAATTCGTGTACTactatcgttttttattatgaatgttggtaacgctcatgagtttctcatctactatt           <  1:1466496‑M2/91‑57 (MQ=255)

                                                                                  aaaCGATAGTGTACACGTTAATGAATTCGTGTACTactatcgttttttattatgaatgtgggtaacgctcatgagtttctcatctactatt           <  1:1466113‑M2/91‑57 (MQ=255)

                                                                                    aCGATAGTagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactatttaa         >  1:892074‑M1/1‑8 (MQ=255)

                                                                                    aCGATAGTagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactatttaa         <  1:1622380‑M1/91‑84 (MQ=255)

                                                                                     cGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacacaacaca        >  1:2563314/1‑91 (MQ=255)

                                                                                      gATAGTGTACACGTTAATGAATTCGTGTACTactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactatttaatc       <  1:1675325‑M2/91‑61 (MQ=255)

                                                                                        tagtagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactatttaatctt     <  1:2231119‑M1/91‑88 (MQ=255)

                                                                                        tAGTGTACACGTTAATGAATTCGTGTACTactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactatttaatctt     <  1:913212‑M2/91‑63 (MQ=255)

                                                                                         agtagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactatttaatctta    >  1:1346174‑M1/1‑3 (MQ=255)

                                                                                         agtagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactatttaatctta    >  1:223827‑M1/1‑3 (MQ=255)

                                                                                         aGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATaaa    >  1:1416672/1‑91 (MQ=255)

                                                                                          gtgtACACGTTAATGAATTCGTGTACTactatcgtttttattatgaatgttggtaatgctcatgagtttttcatctattatctaatcttaa   <  1:712341‑M2/91‑65 (MQ=255)

                                                                                          gtgtACACGTTAATGAATTCGTGTACTactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactatttaatcttaa   <  1:3338148‑M2/91‑65 (MQ=255)

                                                                                           tgtACACGTTAATGACTTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACt  >  1:3542279/1‑91 (MQ=255)

                                                                                           tgtACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACt  <  1:51799/91‑1 (MQ=255)

                                                                                           tgtACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACt  <  1:407459/91‑1 (MQ=255)

ATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACT  >  USA300TCH1516_ALE/2693289‑2693469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.