| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2699622 = | 66 (0.670) | 7 (0.080) | 5/140 | NT | 11.9% | intergenic (+29/+61) | copZ/ldhD_2 | Copper chaperone CopZ/D‑lactate dehydrogenase |
| ? | USA300TCH1516_ALE | 2699690 = | 46 (0.530) | coding (992/999 nt) | ldhD_2 | D‑lactate dehydrogenase | |||||
GTATTGCAGACTGGAGATACTAGGTTACGAGTAAATTAAAAATCGAACTGATGAGATAATTTGGATTGTTGGGATTCTCATCAGTTCGATTTTTTAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2699721‑2699622‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttttaatttACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAGTATA > USA300TCH1516_ALE/2699690‑2699778 GTATTGCAGACTGGAGATACTAGGTTACGAGTAAATTAAAAATCGAACTGATGAGATAATTTGGATTGTTGGGATTCTCATCAGTTCGATT > 1:1411214/1‑91 TATTGCAGACTGGAGATACTAGGTTACGAGTAAATTAAAAATCGAACTGATGAGATAATTTGGATTGTTGGGATTCTCATCAGTTCGATTT < 1:1358182/91‑1 TATTGCAGACTGGAGATACTAGGTTACGAGTAAATTAAAAATCGAACTGATGAGATAATTTGGATTGTTGGGATTCTCATCAGTTCGATTT < 1:1465138/91‑1 TATTGCAGACTGGAGATACTAGGTTACGAGTAAATTAAAAATCGAACTGATGAGATAATTTGGATTGTTGGGATTCTCATCAGTTCGATTT < 1:1465403/91‑1 GCAGACTGGAGATACTAGGTTACGAGTAAATTAAAAATCGAACTGATGAGATAATTTGGATCGTTGGGATTCTCATCAGTTCGATTTTTTA > 1:3328168/1‑91 AAAATCGAACTGATGAGATAATTTGGATTGTTGGGATTCTCATCAGTTCGATTTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAA > 1:1706918/1‑91 GATGAGATAATTTGGATTGTTGGGATTCTCATCAGTTCGATTTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATG > 1:335390/1‑91 AGATAATTTGGATTGTTGGGATTCTCATCAGTTCGATTTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGC > 1:1563177/1‑91 AGATAATTTGGATTGTTGGGATTCTCATCAGTTCGA‑TTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCA > 1:3263167/1‑91 GATAATTTGGATTGTTGGGATTCTCATCAGTTCGATTTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCA > 1:2825801/1‑91 GATAATTTGGATTGTTGGGATTCTCATCAGTTCGA‑TTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCAT > 1:121847/1‑91 TTTGGATTGTTGGGATTCTCATCAGTTCGA‑TTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAAT > 1:2703560/1‑91 TTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTC > 1:2592445/1‑91 AATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAGT < 1:3109747/91‑1 AATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAGT < 1:857681/91‑1 ATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAGTA > 1:2643407/1‑91 ATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAGTA < 1:2314849/91‑1 TTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAGTAT < 1:2522086/91‑1 TTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAGTATA < 1:3486443/91‑1 GTATTGCAGACTGGAGATACTAGGTTACGAGTAAATTAAAAATCGAACTGATGAGATAATTTGGATTGTTGGGATTCTCATCAGTTCGATTTTTTAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2699721‑2699622‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttttaatttACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAGTATA > USA300TCH1516_ALE/2699690‑2699778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |