| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2704632 = | 86 (0.870) | 7 (0.080) | 4/142 | NT | 8.5% | coding (37/864 nt) | crtM | Dehydrosqualene synthase |
| ? | USA300TCH1516_ALE | 2704670 = | 75 (0.860) | intergenic (‑2/+35) | crtM/crtQ | Dehydrosqualene synthase/4,4'‑diaponeurosporenoate glycosyltransferase | |||||
TTCTATATCTAAAGAACAATAAATCAAGGTAATGGCATTTCAATATAGGAGGACTAGTATGACAATGATGGATATGAATTTTAAATATTGTCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2704726‑2704632‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgtcataCTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCTTTCCATTCAACTACACCATA > USA300TCH1516_ALE/2704670‑2704758 TTCTATATCTAAAGAACAATAAATCAAGGTAATGGCATTTCAATATAGGAGGACTAGTATGACAATGATGGATATGAATTTTAAATATTGT < 1:4009791/91‑1TTCTATATCTAAAGAACAATAAATCAAGGTAATGGCATTTCAATATAGGAGGACTAGTATGACAATGATGGATATGAATTTTAAATATTGT > 1:384136/1‑91TTCTATATCTAAAGAACAATAAATCAAGGTAATGGCATTTCAATATAGGAGGACTAGTATGACAATGATGGATATGAATTTTAAATATTGT < 1:2988301/91‑1TTCTATATCTAAAGAACAATAAATCAAGGTAATGGCATTTCAATATAGGAGGACTAGTATGACAATGATGGATATGAATTTTAAATATTGT > 1:2541630/1‑91 TCTATATCTAAAGAACAATAAATCAAGGTAATGGCATTTCAATATAGGAGGACTAGTATGACAATGATGGATATGAATTTTAAATATTGTC < 1:2668909/91‑1 CTATATCTAAAGAACAATAAATCAAGGTAATGGCATTTCAATATAGGAGGACTAGTATGACAATGATGGATATGAATTTTAAATATTGTCA < 1:2792981/91‑1 CTATATCTAAAGAACAATAAATCAAGGTAATGGCATTTCAATATAGGAGGACTAGTATGACAATGATGGATATGAATTTTAAATATTGTCA < 1:2792913/91‑1 ATATCTAAAGAACAATAAATCAAGGTAATGGCATTTCAATATAGGAGGACTAGTATGACAATGATGGATATGAATTTTAAATATTGTCATA > 1:878943/1‑91 ATATCTAAAGAACAATAAATCAAGGTAATGGCATTTCAATATAGGAGGACTAGTATGACAATGATGGATATGAATTTTAAATATTGTCATA > 1:683831/1‑91 GACAATGATGGATATGAATTTTAAATATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGA > 1:1934715/1‑91 ACAATGATGGATATGAATTTTAAATATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAA > 1:2426071/1‑91 ACAATGATGGATATGAATTTTAAATATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAA > 1:370458/1‑91 ACAATGATGGATATGAATTTTAAATATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAA > 1:1223503/1‑91 ACAATGATGGATATGAATTTTAAATATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAA > 1:1057415/1‑91 AATGATGGATATGAATTTTAAATATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGTATA > 1:3210240/1‑91 TGATGGATATGAATTTTAAATATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATT > 1:3785847/1‑91 ATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCTTTCCATTCAACTA > 1:1604854/1‑91 CATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCTTTCCATTCAACTACACCA < 1:1150990/91‑1 TACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCTTTCCATTCAACTACACCATA > 1:92304/1‑91 TTCTATATCTAAAGAACAATAAATCAAGGTAATGGCATTTCAATATAGGAGGACTAGTATGACAATGATGGATATGAATTTTAAATATTGTCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2704726‑2704632‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgtcataCTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCTTTCCATTCAACTACACCATA > USA300TCH1516_ALE/2704670‑2704758 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |