BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2704632 =	86 (0.870)	7 (0.080)	4/142	NT	8.5%	coding (37/864 nt)	crtM	Dehydrosqualene synthase
*	?	USA300TCH1516_ALE	2704670 =	75 (0.860)	7 (0.080)	4/142	NT	8.5%	intergenic (‑2/+35)	crtM/crtQ	Dehydrosqualene synthase/4,4'‑diaponeurosporenoate glycosyltransferase

Only 100 of 105 total aligned reads displayed.

GTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCTTTCCATTCAACTACACCATAAC  >  USA300TCH1516_ALE/2704581‑2704760

gTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACt                                                                                           <  1:781181/91‑1 (MQ=255)

gTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACt                                                                                           <  1:354938/91‑1 (MQ=255)

gTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACt                                                                                           <  1:3650034/91‑1 (MQ=255)

 tAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTa                                                                                          >  1:2575170/1‑91 (MQ=255)

 tAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTa                                                                                          <  1:4092269/91‑1 (MQ=255)

 tAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTa                                                                                          >  1:2855735/1‑91 (MQ=255)

 tAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTa                                                                                          >  1:2855998/1‑91 (MQ=255)

  aaCAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAg                                                                                         <  1:606951/91‑1 (MQ=255)

   aCAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGt                                                                                        >  1:648245/1‑91 (MQ=255)

   aCAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGt                                                                                        <  1:2388321/91‑1 (MQ=255)

    cAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGtc                                                                                       >  1:1005414/1‑91 (MQ=255)

    cAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGtc                                                                                       <  1:3929833/91‑1 (MQ=255)

     aaGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGtcc                                                                                      >  1:511245/1‑91 (MQ=255)

         cAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTcctcct                                                                                  <  1:2448058/91‑1 (MQ=255)

         cAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTcctcct                                                                                  <  1:1856883/91‑1 (MQ=255)

         cAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTcctcct                                                                                  >  1:3420792/1‑91 (MQ=255)

          aaaaGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCta                                                                                 >  1:2996481/1‑91 (MQ=255)

           aaaGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCtat                                                                                >  1:681137/1‑91 (MQ=255)

           aaaGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCtat                                                                                >  1:3009232/1‑91 (MQ=255)

            aaGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCtata                                                                               >  1:1268584/1‑91 (MQ=255)

            aaGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCtata                                                                               <  1:2470713/91‑1 (MQ=255)

              gCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATAtt                                                                             <  1:2336161/91‑1 (MQ=255)

              gCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATAtt                                                                             <  1:2327626/91‑1 (MQ=255)

               cGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTg                                                                            <  1:102199/91‑1 (MQ=255)

               cGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTg                                                                            >  1:2544222/1‑91 (MQ=255)

                 tAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGaa                                                                          <  1:3429315/91‑1 (MQ=255)

                 tAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGaa                                                                          <  1:2430957/91‑1 (MQ=255)

                  aaGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGaaa                                                                         <  1:1279295/91‑1 (MQ=255)

                   aGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAAt                                                                        >  1:2586872/1‑91 (MQ=255)

                    gAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATg                                                                       >  1:1237728/1‑91 (MQ=255)

                        aGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCAt                                                                   >  1:559693/1‑91 (MQ=255)

                         gCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCAtt                                                                  >  1:3527191/1‑91 (MQ=255)

                          cTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTa                                                                 >  1:2795217/1‑91 (MQ=255)

                           tttttGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTAc                                                                <  1:710681/91‑1 (MQ=255)

                             tttGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCt                                                              <  1:2745833/91‑1 (MQ=255)

                              ttGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCtt                                                             <  1:607598/91‑1 (MQ=255)

                                gAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGa                                                           >  1:3235360/1‑91 (MQ=255)

                                gAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGa                                                           <  1:1471686/91‑1 (MQ=255)

                                   tGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGAttt                                                        <  1:1981491/91‑1 (MQ=255)

                                    gTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTa                                                       <  1:3479319/91‑1 (MQ=255)

                                     tttCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTAt                                                      <  1:2905172/91‑1 (MQ=255)

                                     tttCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTAt                                                      <  1:1730647/91‑1 (MQ=255)

                                      ttcttcATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTAtt                                                     <  1:106158/91‑1 (MQ=255)

                                       tcttcATGATTTTATGACAATATTTTAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTg                                                    <  1:3845528/91‑1 (MQ=255)

                                       tcttcATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTg                                                    <  1:1568006/91‑1 (MQ=255)

                                         ttcATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGtt                                                  >  1:385587/1‑91 (MQ=255)

                                          tcATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTc                                                 <  1:531808/91‑1 (MQ=255)

                                          tcATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTc                                                 <  1:1714772/91‑1 (MQ=255)

                                           cATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCt                                                <  1:3260913/91‑1 (MQ=255)

                                             tGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCttt                                              <  1:308441/91‑1 (MQ=255)

                                               aTTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAg                                            >  1:2555062/1‑91 (MQ=255)

                                                ttttATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGa                                           >  1:3276347/1‑91 (MQ=255)

                                                  ttATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGata                                         <  1:161341/91‑1 (MQ=255)

                                                   TATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGatat                                        >  1:878943‑M1/1‑91 (MQ=255)

                                                   TATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGatat                                        >  1:683831‑M1/1‑91 (MQ=255)

                                                     TGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAg                                      <  1:2792913‑M1/91‑1 (MQ=255)

                                                     TGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAg                                      <  1:2792981‑M1/91‑1 (MQ=255)

                                                      gacaatgatggatatgaattttaaatattgtcataCTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGa                                     >  1:1934715‑M2/36‑91 (MQ=255)

                                                      GACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGa                                     <  1:2668909‑M1/91‑1 (MQ=255)

                                                       acaatgatggatatgaattttaaatattgtcataCTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGaa                                    >  1:1057415‑M2/35‑91 (MQ=255)

                                                       acaatgatggatatgaattttaaatattgtcataCTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGaa                                    >  1:1223503‑M2/35‑91 (MQ=255)

                                                       acaatgatggatatgaattttaaatattgtcataCTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGaa                                    >  1:2426071‑M2/35‑91 (MQ=255)

                                                       acaatgatggatatgaattttaaatattgtcataCTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGaa                                    >  1:370458‑M2/35‑91 (MQ=255)

                                                       ACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGaa                                    >  1:2541630‑M1/1‑91 (MQ=255)

                                                       ACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGaa                                    <  1:2988301‑M1/91‑1 (MQ=255)

                                                       ACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGaa                                    <  1:4009791‑M1/91‑1 (MQ=255)

                                                       ACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGaa                                    >  1:384136‑M1/1‑91 (MQ=255)

                                                         aatgatggatatgaattttaaatattgtcataCTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGtata                                  >  1:3210240‑M2/33‑91 (MQ=255)

                                                           tgatggatatgaattttaaatattgtcataCTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATAtt                                >  1:3785847‑M2/31‑91 (MQ=255)

                                                            atTTAAAATTCATATCCATCATTGTCATACTATTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTCAGATATAGAATATTg                               <  1:3530867/91‑1 (MQ=255)

                                                            atTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTg                               <  1:2260099/91‑1 (MQ=255)

                                                            atTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTg                               <  1:2260127/91‑1 (MQ=255)

                                                            atTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTg                               <  1:3773935/91‑1 (MQ=255)

                                                             tttAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTga                              <  1:40053/91‑1 (MQ=255)

                                                               tAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTgacg                            <  1:446034/91‑1 (MQ=255)

                                                               tAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTgacg                            >  1:3945042/1‑91 (MQ=255)

                                                               tAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTgacg                            <  1:1266047/91‑1 (MQ=255)

                                                               tAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTgacg                            >  1:3097727/1‑91 (MQ=255)

                                                               tAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTgacg                            >  1:783292/1‑91 (MQ=255)

                                                                aaaaTTGATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTgtcga                           >  1:3221582/1‑91 (MQ=255)

                                                                aaaaTTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTgacga                           >  1:3256205/1‑91 (MQ=255)

                                                                  aaTTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGAcc                         <  1:1877494/91‑1 (MQ=255)

                                                                  aaTTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGAcc                         <  1:2222065/91‑1 (MQ=255)

                                                                  aaTTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGAcc                         <  1:2222979/91‑1 (MQ=255)

                                                                  aaTTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGAcc                         >  1:3167015/1‑91 (MQ=255)

                                                                     tCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCttt                      <  1:4074244/91‑1 (MQ=255)

                                                                     tCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCttt                      <  1:2391418/91‑1 (MQ=255)

                                                                      cATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGAAGACCTTTc                     >  1:2883850/1‑91 (MQ=255)

                                                                      cATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGAAGACCTTTc                     >  1:2883819/1‑91 (MQ=255)

                                                                       atatCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCTTTcc                    >  1:1583035/1‑91 (MQ=255)

                                                                       atatCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCTTTcc                    >  1:3644816/1‑91 (MQ=255)

                                                                       atatCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCTTTcc                    >  1:3643905/1‑91 (MQ=255)

                                                                        tatCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCTTTCCa                   >  1:3260726/1‑91 (MQ=255)

                                                                         atCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTAGCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCTTTCCAt                  <  1:3289232/91‑1 (MQ=255)

                                                                         atCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCTTTCCAt                  >  1:1144086/1‑91 (MQ=255)

                                                                          tCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCTTTCCAtt                 >  1:1407839/1‑91 (MQ=255)

                                                                          tCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCTTTCCAtt                 <  1:1302188/91‑1 (MQ=255)

                                                                                attgtcataCTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCTTTCCATTCAACTa           >  1:1604854‑M2/10‑91 (MQ=255)

                                                                                     cataCTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCTTTCCATTCAACTACACCa      <  1:1150990‑M2/87‑1 (MQ=255)

                                                                                         cTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTGTTTAGATATAGAATATTGACGACCTTTCCATTCAACTACACCATAAc  <  1:4139735/91‑1 (MQ=255)

GTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATATAGAATATTGACGACCTTTCCATTCAACTACACCATAAC  >  USA300TCH1516_ALE/2704581‑2704760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.