BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2704632 =	86 (0.870)	7 (0.080)	4/142	NT	8.5%	coding (37/864 nt)	crtM	Dehydrosqualene synthase
*	?	USA300TCH1516_ALE	2704670 =	75 (0.860)	7 (0.080)	4/142	NT	8.5%	intergenic (‑2/+35)	crtM/crtQ	Dehydrosqualene synthase/4,4'‑diaponeurosporenoate glycosyltransferase

Only 100 of 105 total aligned reads displayed.

CAGCATAAATTGCCCAAACCGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATAT  >  USA300TCH1516_ALE/2704542‑2704722

caGCATAAATTGCCCAAACCGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGAtttt                                                                                            <  1:3192355/91‑1 (MQ=255)

 tatggtgtagttgaatggaaaggtcgtcaatattctatatctaaagaacaataaatcaaggtaatggcatttcaatataggaggactagTa                                                                                           >  1:92304‑M1/90‑91 (MQ=255)

 aGCATAAATTGCCCAAACCGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTa                                                                                           >  1:3913999/1‑91 (MQ=255)

   tggtgtagttgaatggaaaggtcgtcaatattctatatctaaagaacaataaatcaaggtaatggcatttcaatataggaggactagTATg                                                                                         <  1:1150990‑M1/4‑1 (MQ=255)

   cATAAATTGCCCAAACCGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATg                                                                                         <  1:2375056/91‑1 (MQ=255)

     tAAATTGCCCAAACCGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGAc                                                                                       <  1:2338920/91‑1 (MQ=255)

     tAAATTGCCCAAACCGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGAc                                                                                       <  1:33127/91‑1 (MQ=255)

     tAAATTGCCCAAACCGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGAc                                                                                       <  1:3396336/91‑1 (MQ=255)

       aaTTGCCCAAACCGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACaa                                                                                     >  1:3941047/1‑91 (MQ=255)

       aaTTGCCCAAACCGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACaa                                                                                     <  1:559923/91‑1 (MQ=255)

        tagttgaatggaaaggtcgtcaatattctatatctaaagaacaataaatcaaggtaatggcatttcaatataggaggactagTATGACAat                                                                                    >  1:1604854‑M1/83‑91 (MQ=255)

         ttGCCCAAACCGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAata                                                                                   <  1:3362468/91‑1 (MQ=255)

         ttGCCCAAACCGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAata                                                                                   <  1:478001/91‑1 (MQ=255)

          tGCCCAAACCGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAatat                                                                                  <  1:162251/91‑1 (MQ=255)

          tGCCCAAACCGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAatat                                                                                  >  1:517106/1‑91 (MQ=255)

           gCCCAAACCTCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATAtt                                                                                 <  1:3985076/91‑1 (MQ=255)

           gCCCAAACCGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATAtt                                                                                 >  1:603484/1‑91 (MQ=255)

              cAAACCGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTaa                                                                              >  1:1348887/1‑91 (MQ=255)

              cAAACCGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTaa                                                                              <  1:3499901/91‑1 (MQ=255)

                  ccGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAAtt                                                                          <  1:2904734/91‑1 (MQ=255)

                  ccGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAAtt                                                                          >  1:3327037/1‑91 (MQ=255)

                  ccGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAAtt                                                                          >  1:1614073/1‑91 (MQ=255)

                    gCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCa                                                                        <  1:1443352/91‑1 (MQ=255)

                       tttCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCatat                                                                     >  1:3710219/1‑91 (MQ=255)

                        ttCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATc                                                                    <  1:2010794/91‑1 (MQ=255)

                         tCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATcc                                                                   <  1:1840839/91‑1 (MQ=255)

                         tCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATcc                                                                   >  1:3399921/1‑91 (MQ=255)

                            ttGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACGATATTTAAAATTCATATCcatc                                                                >  1:2143431/1‑91 (MQ=255)

                            ttGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCcatc                                                                >  1:2896850/1‑91 (MQ=255)

                            ttGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCcatc                                                                >  1:2815009/1‑91 (MQ=255)

                            ttGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCcatc                                                                <  1:2471314/91‑1 (MQ=255)

                             tGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCcatca                                                               <  1:1416882/91‑1 (MQ=255)

                             aatattctatatctaaagaacaataaatcaaggtaatggcatttcaatataggaggactagTATGACAATATTTAAAATTCATATCcatca                                                               >  1:3785847‑M1/62‑91 (MQ=255)

                              gATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCcatcat                                                              >  1:1946731/1‑91 (MQ=255)

                               tatactatatctaaagaacaataaatcaaggtaatggcatttcaatataggaggactagTATGACAATATTTAAAATTCATATCCATCAtt                                                             >  1:3210240‑M1/60‑91 (MQ=255)

                                tcttctGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTg                                                            <  1:491232/91‑1 (MQ=255)

                                 ttctatatctaaagaacaataaatcaaggtaatggcatttcaatataggaggactagTATGACAATATTTAAAATTCATATCCATCATTGt                                                           >  1:370458‑M1/58‑91 (MQ=255)

                                 ttctatatctaaagaacaataaatcaaggtaatggcatttcaatataggaggactagTATGACAATATTTAAAATTCATATCCATCATTGt                                                           >  1:1223503‑M1/58‑91 (MQ=255)

                                 ttctatatctaaagaacaataaatcaaggtaatggcatttcaatataggaggactagTATGACAATATTTAAAATTCATATCCATCATTGt                                                           >  1:1057415‑M1/58‑91 (MQ=255)

                                 ttctatatctaaagaacaataaatcaaggtaatggcatttcaatataggaggactagTATGACAATATTTAAAATTCATATCCATCATTGt                                                           >  1:2426071‑M1/58‑91 (MQ=255)

                                 cttctGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGt                                                           <  1:2967557/91‑1 (MQ=255)

                                  ttctGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTc                                                          <  1:1853846/91‑1 (MQ=255)

                                  tctatatctaaagaacaataaatcaaggtaatggcatttcaatataggaggactagTATGACAATATTTAAAATTCATATCCATCATTGTc                                                          >  1:1934715‑M1/57‑91 (MQ=255)

                                    ctGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCAt                                                        >  1:2522907/1‑91 (MQ=255)

                                       gTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACt                                                     <  1:781181/91‑1 (MQ=255)

                                       gTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACt                                                     <  1:3650034/91‑1 (MQ=255)

                                       gTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACt                                                     <  1:354938/91‑1 (MQ=255)

                                        tAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTa                                                    >  1:2855998/1‑91 (MQ=255)

                                        tAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTa                                                    <  1:4092269/91‑1 (MQ=255)

                                        tAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTa                                                    >  1:2855735/1‑91 (MQ=255)

                                        tAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTa                                                    >  1:2575170/1‑91 (MQ=255)

                                         aaCAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAg                                                   <  1:606951/91‑1 (MQ=255)

                                          aCAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGt                                                  >  1:648245/1‑91 (MQ=255)

                                          aCAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGt                                                  <  1:2388321/91‑1 (MQ=255)

                                           cAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGtc                                                 >  1:1005414/1‑91 (MQ=255)

                                            aaGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGtcc                                                >  1:511245/1‑91 (MQ=255)

                                                cAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTcctcct                                            <  1:1856883/91‑1 (MQ=255)

                                                cAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTcctcct                                            >  1:3420792/1‑91 (MQ=255)

                                                cAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTcctcct                                            <  1:2448058/91‑1 (MQ=255)

                                                cAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTcctcct                                            >  1:2579240/1‑91 (MQ=255)

                                                 aaaaGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCta                                           >  1:2996481/1‑91 (MQ=255)

                                                  aaaGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCtat                                          >  1:3009232/1‑91 (MQ=255)

                                                  aaaGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCtat                                          >  1:681137/1‑91 (MQ=255)

                                                   aaGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCtata                                         >  1:1268584/1‑91 (MQ=255)

                                                   aaGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCtata                                         <  1:2470713/91‑1 (MQ=255)

                                                     gCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATAtt                                       <  1:2336161/91‑1 (MQ=255)

                                                     gCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATAtt                                       <  1:2327626/91‑1 (MQ=255)

                                                      cGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTg                                      <  1:102199/91‑1 (MQ=255)

                                                      cGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTg                                      >  1:2544222/1‑91 (MQ=255)

                                                        tAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGaa                                    <  1:3429315/91‑1 (MQ=255)

                                                        tAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGaa                                    <  1:2430957/91‑1 (MQ=255)

                                                         aaGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGaaa                                   <  1:1279295/91‑1 (MQ=255)

                                                          aGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAAt                                  >  1:2586872/1‑91 (MQ=255)

                                                           gAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATg                                 >  1:1237728/1‑91 (MQ=255)

                                                               aGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCAt                             >  1:559693/1‑91 (MQ=255)

                                                                gCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCAtt                            >  1:3527191/1‑91 (MQ=255)

                                                                 cTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTa                           >  1:2795217/1‑91 (MQ=255)

                                                                  tttttGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTAc                          <  1:710681/91‑1 (MQ=255)

                                                                    tttGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCt                        <  1:2745833/91‑1 (MQ=255)

                                                                     ttGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCtt                       <  1:607598/91‑1 (MQ=255)

                                                                       gAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGa                     <  1:1471686/91‑1 (MQ=255)

                                                                       gAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGa                     >  1:3235433/1‑91 (MQ=255)

                                                                       gAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGa                     >  1:3235360/1‑91 (MQ=255)

                                                                          tGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGAttt                  <  1:1981491/91‑1 (MQ=255)

                                                                          tGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGAttt                  <  1:3893876/91‑1 (MQ=255)

                                                                           gTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTa                 <  1:3479319/91‑1 (MQ=255)

                                                                            tttCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTAt                <  1:2905172/91‑1 (MQ=255)

                                                                            tttCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTAt                <  1:1730647/91‑1 (MQ=255)

                                                                             ttcttcATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTAtt               <  1:106158/91‑1 (MQ=255)

                                                                              tcttcATGATTTTATGACAATATTTTAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTg              <  1:3845528/91‑1 (MQ=255)

                                                                              tcttcATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTg              <  1:1568006/91‑1 (MQ=255)

                                                                                ttcATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGtt            >  1:385587/1‑91 (MQ=255)

                                                                                 tcATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTc           <  1:1714772/91‑1 (MQ=255)

                                                                                 tcATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTc           <  1:531808/91‑1 (MQ=255)

                                                                                    tGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCttt        <  1:308441/91‑1 (MQ=255)

                                                                                      aTTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAg      >  1:2555062/1‑91 (MQ=255)

                                                                                       ttttATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGa     >  1:3276347/1‑91 (MQ=255)

                                                                                         ttATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGata   <  1:161341/91‑1 (MQ=255)

                                                                                          TATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGatat  >  1:683831‑M1/1‑91 (MQ=255)

                                                                                          TATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGatat  >  1:878943‑M1/1‑91 (MQ=255)

CAGCATAAATTGCCCAAACCGCTTTTCTTTGATCTTCTGGTAACAAGTCAAAAGCGTAAGAAAAGCTTTTTGAATGTTTCTTCATGATTTTATGACAATATTTAAAATTCATATCCATCATTGTCATACTAGTCCTCCTATATTGAAATGCCATTACCTTGATTTATTGTTCTTTAGATAT  >  USA300TCH1516_ALE/2704542‑2704722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.