| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2716742 = | 97 (0.990) | 7 (0.080) | 4/138 | NT | 8.8% | intergenic (+50/+100) | USA300HOU_RS13965/USA300HOU_RS13970 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2716816 = | 62 (0.730) | intergenic (+124/+26) | USA300HOU_RS13965/USA300HOU_RS13970 | hypothetical protein/hypothetical protein | |||||
AATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2716841‑2716742‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatgggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCC > USA300TCH1516_ALE/2716816‑2716904 AATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGT < 1:40191/91‑1 ATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTA > 1:3776584/1‑91 ATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTA < 1:1478804/91‑1 ATGAAATACTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTA < 1:1004336/91‑1 TGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTAT < 1:3824249/91‑1 TGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTAT < 1:697335/91‑1 AAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGG < 1:2311760/91‑1 AAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGG < 1:3285/91‑1 AAATGCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGG > 1:3276707/1‑91 ATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGC < 1:1842622/91‑1 ATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGC < 1:1918014/91‑1 ATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGC < 1:389268/91‑1 ATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGC < 1:389161/91‑1 TTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCT < 1:3378931/91‑1 TTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCT < 1:265758/91‑1 TTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCT < 1:265837/91‑1 TCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTT < 1:1355969/91‑1 CTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT < 1:3404527/91‑1 CCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTT > 1:1594469/1‑91 CCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTT > 1:1594678/1‑91 CCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTT > 1:1594412/1‑91 CATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTC > 1:72161/1‑91 GAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTA > 1:505119/1‑91 GAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTA > 1:505198/1‑91 GGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTG > 1:3830475/1‑91 TGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATA > 1:3909211/1‑91 TGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATA > 1:4045208/1‑91 GGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAA > 1:2668192/1‑91 GGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAA < 1:1073022/91‑1 GGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAA < 1:903027/91‑1 GCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAA > 1:1937090/1‑91 CTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAAC > 1:1060284/1‑91 TTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACC > 1:4093271/1‑91 TTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACC > 1:1043588/1‑91 TTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCC < 1:3067575/91‑1 AATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2716841‑2716742‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatgggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCC > USA300TCH1516_ALE/2716816‑2716904 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |