| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2716742 = | 97 (0.990) | 7 (0.080) | 4/138 | NT | 8.8% | intergenic (+50/+100) | USA300HOU_RS13965/USA300HOU_RS13970 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2716816 = | 62 (0.730) | intergenic (+124/+26) | USA300HOU_RS13965/USA300HOU_RS13970 | hypothetical protein/hypothetical protein | |||||
Only 100 of 110 total aligned reads displayed.
ACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCC > USA300TCH1516_ALE/2716727‑2716904 | aCTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCttttt > 1:2870116/1‑91 (MQ=255)aCTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTACGGGCtattt > 1:3732185/1‑91 (MQ=255) cTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTttta < 1:1553453/91‑1 (MQ=255) tGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTtttat < 1:1443166/91‑1 (MQ=255) tGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACACTTCATCTCTGTATGGGCTTtttat > 1:3871174/1‑91 (MQ=255) gACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTtttctt > 1:1131585/1‑91 (MQ=255) aCCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTtttattt > 1:4115925/1‑91 (MQ=255) aCCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTtttattt > 1:1579855/1‑91 (MQ=255) ccTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTtttattta < 1:2816865/91‑1 (MQ=255) ccTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTtttattta < 1:2816578/91‑1 (MQ=255) cTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTttatttat > 1:4018271/1‑91 (MQ=255) aTAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCt > 1:1564931/1‑91 (MQ=255) aTAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCt < 1:3362374/91‑1 (MQ=255) aTAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCt < 1:3383345/91‑1 (MQ=255) tAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCtt < 1:1080294/91‑1 (MQ=255) AAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTgag < 1:3404527‑M1/91‑1 (MQ=255) AAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTgaga < 1:1355969‑M1/91‑1 (MQ=255) AGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGaa < 1:265837‑M1/91‑1 (MQ=255) AGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGaa < 1:265758‑M1/91‑1 (MQ=255) AGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGaa < 1:3378931‑M1/91‑1 (MQ=255) GCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAt < 1:389161‑M1/91‑1 (MQ=255) GCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAt < 1:389268‑M1/91‑1 (MQ=255) GCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAt < 1:1842622‑M1/91‑1 (MQ=255) GCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAt < 1:1918014‑M1/91‑1 (MQ=255) CCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGCAttt > 1:3276707‑M1/1‑91 (MQ=255) CCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAttt < 1:2311760‑M1/91‑1 (MQ=255) CCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAttt < 1:3285‑M1/91‑1 (MQ=255) ATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCa < 1:697335‑M1/91‑1 (MQ=255) ATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCa < 1:3824249‑M1/91‑1 (MQ=255) ccatacagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttTTATTTATTCTTTTGAGAAttt > 1:1594678‑M2/70‑91 (MQ=255) ccatacagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttTTATTTATTCTTTTGAGAAttt > 1:1594469‑M2/70‑91 (MQ=255) ccatacagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttTTATTTATTCTTTTGAGAAttt > 1:1594412‑M2/70‑91 (MQ=255) TACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGTATTTCAt < 1:1004336‑M1/91‑1 (MQ=255) TACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCAt > 1:3776584‑M1/1‑91 (MQ=255) catacagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttTTATTTATTCTTTTGAGAATTTc > 1:72161‑M2/69‑91 (MQ=255) ACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCAtt < 1:40191‑M1/91‑1 (MQ=255) aTTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAg < 1:2279363/91‑1 (MQ=255) ttGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGc < 1:3041708/91‑1 (MQ=255) ttGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGc < 1:3557546/91‑1 (MQ=255) gagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttTTATTTATTCTTTTGAGAATTTCATTTTa > 1:505198‑M2/63‑91 (MQ=255) gAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAg > 1:153929/1‑91 (MQ=255) gAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAg < 1:1580185/91‑1 (MQ=255) cacTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaa < 1:3074068/91‑1 (MQ=255) cacTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaa < 1:3075389/91‑1 (MQ=255) cacTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaa < 1:1511102/91‑1 (MQ=255) tAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaaaa < 1:2156831/91‑1 (MQ=255) tAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaaaa < 1:1916701/91‑1 (MQ=255) tAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaaaa < 1:1880083/91‑1 (MQ=255) tAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaaaa < 1:2157055/91‑1 (MQ=255) tAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaaaa < 1:2651227/91‑1 (MQ=255) tAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaaaa < 1:2649328/91‑1 (MQ=255) attagtgtCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaaaa > 1:835888/5‑91 (MQ=255) aaTGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaaaaa < 1:2324003/91‑1 (MQ=255) aTGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAAt > 1:1830160/1‑91 (MQ=255) aTGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAAt > 1:3253458/1‑91 (MQ=255) aTGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAAt > 1:48774/1‑91 (MQ=255) aTGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAAt < 1:2483958/91‑1 (MQ=255) gtgtCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTa > 1:623026/1‑91 (MQ=255) gtgtCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTa > 1:4044577/1‑91 (MQ=255) gtgtCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGACTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTa > 1:3594266/1‑91 (MQ=255) tCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTaaaa < 1:2268886/91‑1 (MQ=255) tgCACCATGGTGCGACACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTaa > 1:304728/2‑91 (MQ=255) gCACCATGGTGCGACACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTaaa > 1:2761867/1‑91 (MQ=255) gCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATg > 1:2106334/1‑91 (MQ=255) gCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATg > 1:1966800/1‑91 (MQ=255) gCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATg < 1:507229/91‑1 (MQ=255) aCCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGgt > 1:1743556/1‑91 (MQ=255) cATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGgtgt < 1:1774261/91‑1 (MQ=255) aTGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGTATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTc < 1:3492778/91‑1 (MQ=255) aTGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTc < 1:3639276/91‑1 (MQ=255) ggtgcgacacattagtgtcttcaatcagtatgggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGgtg > 1:3830475‑M2/39‑91 (MQ=255) gTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCAt < 1:804419/91‑1 (MQ=255) gTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCAt < 1:4044520/91‑1 (MQ=255) gTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCAt < 1:804801/91‑1 (MQ=255) tG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATc < 1:3576203/91‑1 (MQ=255) g‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCa > 1:2479933/1‑91 (MQ=255) cacaGTACGCTTCACATCTGTATGGGTTTTTTATTTATTCTTTTGAGAATTTCATTTTAGAAGACCAAAAAATTAAAATGGTGTCCATCaa < 1:919770/91‑1 (MQ=255) caTTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGa > 1:140730/1‑91 (MQ=255) caTTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGa < 1:1320677/91‑1 (MQ=255) caTTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGa > 1:1574299/1‑91 (MQ=255) aTTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGAt < 1:363715/91‑1 (MQ=255) aCGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCtt < 1:2530509/91‑1 (MQ=255) aCGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCtt < 1:4069325/91‑1 (MQ=255) aCGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGAGCtt > 1:3336333/1‑91 (MQ=255) cATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGACCTTTGAACa > 1:3978309/1‑91 (MQ=255) tctcTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACAtt < 1:2119935/91‑1 (MQ=255) ctctGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTg < 1:3489276/91‑1 (MQ=255) tctGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGc < 1:2930148/91‑1 (MQ=255) tctGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGc < 1:2930175/91‑1 (MQ=255) tctGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGc < 1:2723685/91‑1 (MQ=255) ctGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCt > 1:3700270/1‑91 (MQ=255) tgggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATa > 1:4045208‑M2/9‑91 (MQ=255) gggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATaa > 1:2668192‑M2/8‑91 (MQ=255) gggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATaa < 1:1073022‑M2/84‑1 (MQ=255) ggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATaaa < 1:903027‑M2/85‑1 (MQ=255) gctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATaaaa > 1:1937090‑M2/6‑91 (MQ=255) ctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAAc > 1:1060284‑M2/5‑91 (MQ=255) tttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAAcc > 1:4093271‑M2/4‑91 (MQ=255) tttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAAcc > 1:1043588‑M2/4‑91 (MQ=255) ttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAAccc < 1:3067575‑M2/89‑1 (MQ=255) | ACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCC > USA300TCH1516_ALE/2716727‑2716904 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |