| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2716742 = | 97 (0.990) | 7 (0.080) | 4/138 | NT | 8.8% | intergenic (+50/+100) | USA300HOU_RS13965/USA300HOU_RS13970 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2716816 = | 62 (0.730) | intergenic (+124/+26) | USA300HOU_RS13965/USA300HOU_RS13970 | hypothetical protein/hypothetical protein | |||||
Only 100 of 120 total aligned reads displayed.
TTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAG > USA300TCH1516_ALE/2716652‑2716832 | tttATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACa > 1:1920633/1‑91 (MQ=255) ttATGATCNTCGNCNACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACaa < 1:44019/91‑1 (MQ=255) ggttttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaaaa > 1:1043588‑M1/89‑91 (MQ=255) ggttttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaaaa > 1:4093271‑M1/89‑91 (MQ=255) gttttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAg > 1:1060284‑M1/88‑91 (MQ=255) aTGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAg < 1:2751853/91‑1 (MQ=255) ttttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGc > 1:1937090‑M1/87‑91 (MQ=255) tttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGcc < 1:903027‑M1/6‑1 (MQ=255) gATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGcc < 1:266408/91‑1 (MQ=255) ttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGccc > 1:2668192‑M1/85‑91 (MQ=255) aTCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGccc < 1:2865511/91‑1 (MQ=255) aTCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGccc < 1:529437/91‑1 (MQ=255) tatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGCCCa > 1:3909211‑M1/84‑91 (MQ=255) tCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCa > 1:339575/1‑91 (MQ=255) tCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCa > 1:3232865/1‑91 (MQ=255) tCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCa < 1:2489632/91‑1 (MQ=255) tCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCa < 1:3081264/91‑1 (MQ=255) tCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCa < 1:2649375/91‑1 (MQ=255) tCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCAGAAACAAAGCCCa < 1:3181973/91‑1 (MQ=255) cTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCAt < 1:1863529/91‑1 (MQ=255) tCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATAc < 1:1525952/91‑1 (MQ=255) cGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACt < 1:1584740/91‑1 (MQ=255) gCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTg < 1:915329/91‑1 (MQ=255) gCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTg > 1:80026/1‑91 (MQ=255) gCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTg > 1:80060/1‑91 (MQ=255) gCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTg < 1:1050689/91‑1 (MQ=255) ccAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGa < 1:2367663/91‑1 (MQ=255) ccAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGa < 1:3940257/91‑1 (MQ=255) ccAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGa < 1:2397063/91‑1 (MQ=255) ccAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGa < 1:2367602/91‑1 (MQ=255) aacaaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGAtt > 1:4096065/1‑91 (MQ=255) aacaaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGAtt > 1:545413/1‑91 (MQ=255) aacaaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGAtt > 1:2909995/1‑91 (MQ=255) caaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGa > 1:1081359/1‑91 (MQ=255) aaTACGGTTATATTCAAAATTAATATTTGCTCATGAGGTATTGCACTTAAGGTGCCAACGGACCTCATAAACAAAGCCCATACTGATTGaa < 1:3683276/91‑1 (MQ=255) aaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGaa < 1:714033/91‑1 (MQ=255) ttACATTCATAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTa < 1:3733057/91‑1 (MQ=255) atatTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAAt < 1:2705135/91‑1 (MQ=255) tCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATgtgt < 1:1481348/91‑1 (MQ=255) aaaaTTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCg < 1:1921556/91‑1 (MQ=255) aaaTTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGc > 1:1098794/1‑91 (MQ=255) aaaTTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGc < 1:148602/91‑1 (MQ=255) aaaTTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGc > 1:1098816/1‑91 (MQ=255) aaTTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCa < 1:601004/91‑1 (MQ=255) caccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGCCCATACTGATTGAAGACACTAATGTGTCGCAcc > 1:3830475‑M1/54‑91 (MQ=255) tAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCa < 1:209205/91‑1 (MQ=255) aaTATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATCCTGATTGAAGACACTAATGTGTCGCACCAt > 1:3261944/1‑91 (MQ=255) aaTATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCAt > 1:3656679/1‑91 (MQ=255) atatTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGAGTCGCACCATg > 1:3754726/1‑91 (MQ=255) tatTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATgg > 1:779546/1‑91 (MQ=255) tatTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATgg > 1:1977429/1‑91 (MQ=255) tatTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATgg > 1:3691519/1‑91 (MQ=255) atTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGt > 1:2367552/1‑91 (MQ=255) tttGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTg < 1:261042/91‑1 (MQ=255) tttGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTg > 1:2197477/1‑91 (MQ=255) ttGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGc < 1:2542162/91‑1 (MQ=255) ttGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGc < 1:1025120/91‑1 (MQ=255) gCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGcac < 1:2168570/91‑1 (MQ=255) tCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACAt > 1:2981485/1‑91 (MQ=255) tCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACAt > 1:2983978/1‑91 (MQ=255) tCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACAt < 1:1622515/91‑1 (MQ=255) cACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACAtt < 1:3427911/91‑1 (MQ=255) cGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTAc < 1:418432/91‑1 (MQ=255) cGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTAc < 1:529598/91‑1 (MQ=255) aGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGc < 1:2673100/91‑1 (MQ=255) ggTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCt > 1:3710489/1‑91 (MQ=255) gTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCtt > 1:3078011/1‑91 (MQ=255) aTTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCa < 1:3660832/91‑1 (MQ=255) aTTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCa < 1:1513525/91‑1 (MQ=255) ttGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCAt < 1:598402/91‑1 (MQ=255) ttGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCAt > 1:680151/1‑91 (MQ=255) taaaatgaaattctcaaaagaataaataaAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCAtctc > 1:505119‑M1/30‑91 (MQ=255) taaaatgaaattctcaaaagaataaataaAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCAtctc > 1:505198‑M1/30‑91 (MQ=255) aaGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTAt < 1:1625802/91‑1 (MQ=255) ggTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATgg < 1:3567088/91‑1 (MQ=255) aaattctcaaaagaataaataaAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATgg > 1:1594412‑M1/23‑91 (MQ=255) aaattctcaaaagaataaataaAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATgg > 1:1594678‑M1/23‑91 (MQ=255) tGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGc < 1:630789/91‑1 (MQ=255) tGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGc > 1:1745636/1‑91 (MQ=255) tGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGc > 1:2228560/1‑91 (MQ=255) gCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCt > 1:1025677/1‑91 (MQ=255) cAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCttt > 1:2800974/1‑91 (MQ=255) aCTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCttttt > 1:2870116/1‑91 (MQ=255) aCTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTACGGGCtattt > 1:3732185/1‑91 (MQ=255) cTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTttta < 1:1553453/91‑1 (MQ=255) tGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttat < 1:1443166/91‑1 (MQ=255) tGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACACTTCATCTCTGTATGGGCTTtttat > 1:3871174/1‑91 (MQ=255) gACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttctt > 1:1131585/1‑91 (MQ=255) gACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttatt < 1:3607711/91‑1 (MQ=255) aCCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttattt > 1:4115925/1‑91 (MQ=255) aCCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttattt > 1:1579855/1‑91 (MQ=255) ccTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttattta < 1:2816865/91‑1 (MQ=255) ccTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttattta < 1:2816578/91‑1 (MQ=255) cTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTttatttat > 1:4018271/1‑91 (MQ=255) cATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTc > 1:1664080/1‑91 (MQ=255) aTAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCt < 1:3383345/91‑1 (MQ=255) aTAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCt < 1:3362374/91‑1 (MQ=255) aTAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCt > 1:1564931/1‑91 (MQ=255) tAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCtt < 1:1080294/91‑1 (MQ=255) AAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTgag < 1:3404527‑M1/91‑1 (MQ=255) | TTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAG > USA300TCH1516_ALE/2716652‑2716832 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |