| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2736823 | 47 (0.480) | 6 (0.070) | 5/138 | NT | 12.6% | intergenic (+27/+59) | USA300HOU_RS14090/aldC_2 | Putative 2‑dehydropantoate 2‑reductase/Alpha‑acetolactate decarboxylase |
| ? | USA300TCH1516_ALE | = 2736858 | 43 (0.510) | intergenic (+62/+24) | USA300HOU_RS14090/aldC_2 | Putative 2‑dehydropantoate 2‑reductase/Alpha‑acetolactate decarboxylase | |||||
GTGAACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2736723‑2736823‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagaccttaGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCGCGTAAA < USA300TCH1516_ALE/2736858‑2736769 GTGAACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAA < 1:1641226/91‑1 AACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAA < 1:3837655/91‑1 ACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCAGATATATAATATAAAAAG > 1:3552004/1‑91 CACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATGTAATATAAAAAGA > 1:4147001/1‑91 ACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGAC < 1:1624280/91‑1 ACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGAC > 1:509502/1‑91 ACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGAC < 1:3136526/91‑1 ACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGAC < 1:205963/91‑1 CAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACC < 1:187752/91‑1 ATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTT > 1:1749920/1‑91 ACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAG < 1:989752/91‑1 GCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCT < 1:3077994/91‑1 CAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTAT < 1:44626/91‑1 AACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATA < 1:1278795/91‑1 ACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATAT < 1:572926/91‑1 ACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATAT < 1:397768/91‑1 AAAAGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATA > 1:244397/1‑91 AAAGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATAC > 1:755231/1‑91 AAAGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATAC > 1:755107/1‑91 AAAGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATAC < 1:3192060/91‑1 AGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGC > 1:4053846/1‑91 GACCTTAGCGATATTAGGAACGGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCG < 1:859223/91‑1 GACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCG < 1:3802610/91‑1 GACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCG < 1:713316/91‑1 GACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCG < 1:1697927/91‑1 GACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCG < 1:3719554/91‑1 GACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCG < 1:2187944/91‑1 GACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCG < 1:2187814/91‑1 GACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCACCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCG > 1:1773699/1‑91 ACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCGC > 1:436402/1‑91 CTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCGCGT < 1:1758325/91‑1 CTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCGCGT < 1:298236/91‑1 CTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCGCGT < 1:2466636/91‑1 TTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCGCGTA > 1:1778929/1‑91 TAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCGCGTAA > 1:3038221/1‑91 TAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCGCGTAA > 1:3037250/1‑91 AGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCGCGTAAA > 1:2026973/1‑91 AGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCGCGTAAA > 1:2025365/1‑91 GTGAACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2736723‑2736823‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagaccttaGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTTATATTATATATGTGCTTACATATTTTGTTGATACGCGCGTAAA < USA300TCH1516_ALE/2736858‑2736769 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |