| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2761242 = | 78 (0.790) | 5 (0.060) | 4/144 | NT | 7.3% | intergenic (‑244/+249) | citN/sirC | Citrate transporter/Precorrin‑2 dehydrogenase |
| ? | USA300TCH1516_ALE | 2761289 = | 57 (0.640) | intergenic (‑291/+202) | citN/sirC | Citrate transporter/Precorrin‑2 dehydrogenase | |||||
ATAGAGAAAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCCAGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2761339‑2761242‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagatttCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGCTTA > USA300TCH1516_ALE/2761289‑2761378 ATAGAGAAAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGC < 1:3437380/91‑1ATAGAGAAAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGC < 1:2966695/91‑1 TAGAGAAAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGGAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCC < 1:267476/91‑1 TAGAGAAAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCC < 1:1028936/91‑1 TAGAGAAAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCC < 1:146694/91‑1 TAGAGAAAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCC < 1:146795/91‑1 TAGAGAAAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCC < 1:2934006/91‑1 TAGAGAAAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCC < 1:312203/91‑1 TAGAGAAAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCC < 1:2410562/91‑1 AGAGAAAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCCA < 1:387934/91‑1 AGAGAAAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCCA < 1:1588124/91‑1 AGAAAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCCAGA > 1:2913280/1‑91 AGAAAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCCAGA < 1:4100232/91‑1 AGAAAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCCAGA < 1:2430633/91‑1 AAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCCAGATTT < 1:1071581/91‑1 AAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCCAGATTT > 1:3061379/1‑91 GAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTT > 1:1374768/1‑91 CTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTC > 1:728333/1‑91 TGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCT > 1:1808625/1‑91 TGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTATCT > 1:3347696/1‑91 TACTATCATAGCGACCTTTAGCCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCA < 1:2840038/91‑1 CCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTA > 1:4146208/1‑91 CAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTAT < 1:2593884/91‑1 AGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATC < 1:1724597/91‑1 AGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATC < 1:796966/91‑1 GATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCG < 1:2150283/91‑1 GATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCG > 1:1846718/1‑91 GATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCG < 1:134850/91‑1 GATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCG < 1:134036/91‑1 ATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGC < 1:3660468/91‑1 ATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGC < 1:3660982/91‑1 ATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGC > 1:906785/1‑91 TTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGCT > 1:2541577/1‑91 TTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGCT < 1:2037046/91‑1 TTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGCT < 1:4031261/91‑1 TCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGCTTA > 1:982011/1‑91 TCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGCTTA < 1:1124619/91‑1 TCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGCTTA > 1:3834921/1‑91 ATAGAGAAAAAGATACGTAGAACAAACTTAATAAAATAGGTGGATAAATTGAAATCTGGTTGAAGTCGTTACTATCATAGCGACCTTTAGCCAGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2761339‑2761242‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagatttCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGCTTA > USA300TCH1516_ALE/2761289‑2761378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |