BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2761242 =	78 (0.790)	5 (0.060)	4/144	NT	7.3%	intergenic (‑244/+249)	citN/sirC	Citrate transporter/Precorrin‑2 dehydrogenase
*	?	USA300TCH1516_ALE	2761289 =	57 (0.640)	5 (0.060)	4/144	NT	7.3%	intergenic (‑291/+202)	citN/sirC	Citrate transporter/Precorrin‑2 dehydrogenase

Only 100 of 108 total aligned reads displayed.

CATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGCTTA  >  USA300TCH1516_ALE/2761199‑2761378

aaagatacgtagaacaaacttaataaaataggtggataaattgAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTc                                                                                           >  1:1374768‑M1/44‑91 (MQ=255)

 aTTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCa                                                                                          <  1:1233591/91‑1 (MQ=255)

  ttttGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCaa                                                                                         <  1:649261/91‑1 (MQ=255)

     tGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAAttt                                                                                      <  1:3802620/91‑1 (MQ=255)

      gATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTa                                                                                     >  1:1465444/1‑91 (MQ=255)

         cTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATcc                                                                                  <  1:2585915/91‑1 (MQ=255)

          tATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCa                                                                                 >  1:3513842/1‑91 (MQ=255)

          tATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCa                                                                                 >  1:3513939/1‑91 (MQ=255)

          tATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCa                                                                                 >  1:1137665/1‑91 (MQ=255)

          tATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCa                                                                                 >  1:636030/1‑91 (MQ=255)

           aTCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCAc                                                                                <  1:3601897/91‑1 (MQ=255)

           aTCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCAc                                                                                <  1:2431366/91‑1 (MQ=255)

           aTCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCAc                                                                                >  1:169584/1‑91 (MQ=255)

              aTTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTa                                                                             >  1:1409181/1‑91 (MQ=255)

                ttttATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTAtt                                                                           <  1:3816166/91‑1 (MQ=255)

                ttttATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTAtt                                                                           <  1:344526/91‑1 (MQ=255)

                  ttattaTTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTAtttt                                                                         <  1:1314601/91‑1 (MQ=255)

                   tattatTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTtta                                                                        >  1:3935978/1‑91 (MQ=255)

                   tattatTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTtta                                                                        >  1:1845677/1‑91 (MQ=255)

                    attattGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTttat                                                                       >  1:54650/1‑91 (MQ=255)

                    attattGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTttat                                                                       >  1:3354370/1‑91 (MQ=255)

                     ttattGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTttatt                                                                      >  1:3435587/1‑91 (MQ=255)

                      tattGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTttatta                                                                     <  1:2878649/91‑1 (MQ=255)

                      tattGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTttatta                                                                     <  1:3372330/91‑1 (MQ=255)

                       attGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTaa                                                                    <  1:3716211/91‑1 (MQ=255)

                        ttGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAg                                                                   <  1:151896/91‑1 (MQ=255)

                         tGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGt                                                                  <  1:1206327/91‑1 (MQ=255)

                             ttCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGt                                                              <  1:523306/91‑1 (MQ=255)

                             ttCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGt                                                              <  1:1946556/91‑1 (MQ=255)

                             ttCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGt                                                              <  1:1946769/91‑1 (MQ=255)

                                 aTTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTa                                                          <  1:1641332/91‑1 (MQ=255)

                                 aTTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTa                                                          <  1:535045/91‑1 (MQ=255)

                                  ttGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTAc                                                         <  1:1069490/91‑1 (MQ=255)

                                   tGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACg                                                        <  1:1118940/91‑1 (MQ=255)

                                    gCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTTTCCACCTATTTTATTAAGTTTGTTCTACGt                                                       <  1:379136/91‑1 (MQ=255)

                                    gCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGt                                                       >  1:830458/1‑91 (MQ=255)

                                    gCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGt                                                       <  1:379195/91‑1 (MQ=255)

                                    gCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGt                                                       <  1:379147/91‑1 (MQ=255)

                                     cacaAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTa                                                      <  1:1835564/91‑1 (MQ=255)

                                     cacaAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTa                                                      >  1:2610965/1‑91 (MQ=255)

                                     cacaAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTa                                                      >  1:2610829/1‑91 (MQ=255)

                                      acaAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTAt                                                     >  1:794776/1‑91 (MQ=255)

                                          gaaatctggttgaagtcgttactatcatagcgacctttagccagatttCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCttt                                                 >  1:1374768‑M2/49‑91 (MQ=255)

                                          aaaaTCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCttt                                                 >  1:2793771/1‑91 (MQ=255)

                                          aaaaTCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCttt                                                 >  1:2798179/1‑91 (MQ=255)

                                           AAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCtttt                                                <  1:1071581‑M1/91‑1 (MQ=255)

                                           AAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCtttt                                                >  1:3061379‑M1/1‑91 (MQ=255)

                                              TCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTtct                                             <  1:2430633‑M1/91‑1 (MQ=255)

                                              TCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTtct                                             <  1:4100232‑M1/91‑1 (MQ=255)

                                              TCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTtct                                             >  1:2913280‑M1/1‑91 (MQ=255)

                                               ctggttgaagtcgttactatcatagcgacctttagccagatttCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTtctc                                            >  1:728333‑M2/44‑91 (MQ=255)

                                                tggttgaagtcgttactatcatagcgacctttagccagatttCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTctct                                           >  1:1808625‑M2/43‑91 (MQ=255)

                                                TGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTctct                                           <  1:1588124‑M1/91‑1 (MQ=255)

                                                TGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTctct                                           <  1:387934‑M1/91‑1 (MQ=255)

                                                 GGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTa                                          <  1:312203‑M1/91‑1 (MQ=255)

                                                 GGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTa                                          <  1:2934006‑M1/91‑1 (MQ=255)

                                                 GGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTa                                          <  1:1028936‑M1/91‑1 (MQ=255)

                                                 GGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTa                                          <  1:146694‑M1/91‑1 (MQ=255)

                                                 GGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTa                                          <  1:146795‑M1/91‑1 (MQ=255)

                                                 GGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTa                                          <  1:2410562‑M1/91‑1 (MQ=255)

                                                  GCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTAt                                         <  1:2966695‑M1/91‑1 (MQ=255)

                                                  GCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTAt                                         <  1:3437380‑M1/91‑1 (MQ=255)

                                                    tAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTg                                       <  1:3938615/91‑1 (MQ=255)

                                                     aaaGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGt                                      >  1:2607955/1‑91 (MQ=255)

                                                           cGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATAtt                                >  1:1724445/1‑91 (MQ=255)

                                                           cGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATAtt                                >  1:2037540/1‑91 (MQ=255)

                                                             tactatcatagcgacctttagccagatttCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCa                              <  1:2840038‑M2/62‑1 (MQ=255)

                                                              tATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCat                             <  1:1017768/91‑1 (MQ=255)

                                                              tATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCat                             <  1:3588273/91‑1 (MQ=255)

                                                                tGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCatat                           <  1:3396857/91‑1 (MQ=255)

                                                                tGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCatat                           <  1:3397001/91‑1 (MQ=255)

                                                                 gATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATAtt                          <  1:963883/91‑1 (MQ=255)

                                                                    aGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTaa                       >  1:1455163/1‑91 (MQ=255)

                                                                    aGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTaa                       <  1:1918896/91‑1 (MQ=255)

                                                                         cGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGc                  >  1:286990/1‑91 (MQ=255)

                                                                          gACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCa                 <  1:1410888/91‑1 (MQ=255)

                                                                           aCTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCat                <  1:657717/91‑1 (MQ=255)

                                                                            cTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCata               >  1:2868148/1‑91 (MQ=255)

                                                                             ttCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCatat              <  1:1275932/91‑1 (MQ=255)

                                                                              tCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATc             >  1:3100043/1‑91 (MQ=255)

                                                                               cAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCa            >  1:1620704/1‑91 (MQ=255)

                                                                               cAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCa            <  1:198643/91‑1 (MQ=255)

                                                                               cAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCa            <  1:199198/91‑1 (MQ=255)

                                                                                aaCCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCAt           <  1:1783801/91‑1 (MQ=255)

                                                                                aaCCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCAt           >  1:362446/1‑91 (MQ=255)

                                                                                aaCCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCAt           <  1:1074520/91‑1 (MQ=255)

                                                                                 aCCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTTTCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCAtt          >  1:3315962/1‑91 (MQ=255)

                                                                                   cagatttCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTAt        <  1:2593884‑M2/84‑1 (MQ=255)

                                                                                    agatttCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATc       <  1:1724597‑M2/85‑1 (MQ=255)

                                                                                    agatttCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATc       <  1:796966‑M2/85‑1 (MQ=255)

                                                                                     gatttCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCg      <  1:2150283‑M2/86‑1 (MQ=255)

                                                                                     gatttCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCg      >  1:1846718‑M2/6‑91 (MQ=255)

                                                                                     gatttCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCg      <  1:134036‑M2/86‑1 (MQ=255)

                                                                                      atttCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGc     >  1:906785‑M2/5‑91 (MQ=255)

                                                                                      atttCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGc     <  1:3660982‑M2/87‑1 (MQ=255)

                                                                                       tttCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGCt    <  1:4031261‑M2/88‑1 (MQ=255)

                                                                                       tttCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGCt    >  1:2541577‑M2/4‑91 (MQ=255)

                                                                                       tttCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGCt    <  1:2037046‑M2/88‑1 (MQ=255)

                                                                                         tCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGCTTa  <  1:1124619‑M2/90‑1 (MQ=255)

                                                                                         tCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGCTTa  >  1:3834921‑M2/2‑91 (MQ=255)

CATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGACTTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATTATCGCTTA  >  USA300TCH1516_ALE/2761199‑2761378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.