| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2761249 | 68 (0.690) | 8 (0.090) | 5/144 | NT | 11.9% | intergenic (‑251/+242) | citN/sirC | Citrate transporter/Precorrin‑2 dehydrogenase |
| ? | USA300TCH1516_ALE | = 2761280 | 57 (0.640) | intergenic (‑282/+211) | citN/sirC | Citrate transporter/Precorrin‑2 dehydrogenase | |||||
ATAACATGGCATGACTAATCCTTGTATATCCTGTCCTGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2761156‑2761249‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatctggTTGAA‑GTCGTTACTATCATAGCGACCTTTAGCCAGATTTTTTGTGCAATAGAAAGCAATAATAAAAATGATAGATCAAAATGAAATACA < USA300TCH1516_ALE/2761280‑2761192 ATAACATGGCATGACTAATCCTTGTATATCCTGTCCTGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATC < 1:168707/91‑1 TAACATGGCATGACTAATCCTTGTATATCCTGTCCTGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCT < 1:648835/91‑1 TAACATGGCATGACTAATCCTTGTATATCCTGTCCTGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCT < 1:494314/91‑1 ACATGGCATGACTAATCCTTGTATATCCTGTCCTGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGG < 1:1877756/91‑1 ACATGGCATGACTAATCCTTGTATATCCTGTCCTGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGG < 1:3972613/91‑1 ACATGGCATGACTAATCCTTGTATATCCTGTCCTGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGG > 1:412404/1‑91 ATCCTGTCCTGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGTTGAA‑GTCGTTACTATCATAGCGA < 1:2389578/91‑1 ATCCTGTCCTGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGTTACTATCATAGCG < 1:3056421/91‑1 GTCCTGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGTTGAA‑GTCGTTACTATCATAGCGACCTTT < 1:2451644/91‑1 CTGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGTTGAA‑GTCGTTACTATCATAGCGACCTTTAGC < 1:3360640/91‑1 TGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGTTGAA‑GTCGTTACTATCATAGCGACCTTTAGCC < 1:640165/91‑1 TGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGTTGAA‑GTCGTTACTATCATAGCGACCTTTAGCC < 1:3620128/91‑1 TGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGTTGAA‑GTCGTTACTATCATAGCGACCTTTAGCC < 1:3620145/91‑1 TATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGTTGAA‑GTCGTTACTATCATAGCGACCTTTAGCCAG < 1:548907/91‑1 AAATCTGGTTGAA‑GTCGTTACTATCATAGCGACCTTTAGCCAGATTTTTTGTGCAATAGAAAGCAATAATAAAAATGATAGATCAAAATGA > 1:3127576/1‑91 AATCTGGTTGAA‑GTCGTTACTATCATAGCGACCTTTAGCCAGATTTTTTGTGCAATAGAAAGCAATAATAAAAATGATAGATCAAAATGAA > 1:3864217/1‑91 CTGGTTGAA‑GTCGTTACTATCATAGCGACGTTTAGCCAGATTTTTTGTGCAATAGAAAGCAATAATAAAAATGATAGATCAAAATGAAATA < 1:3322250/91‑1 CTGGTTGAA‑GTCGTTACTATCATAGCGACGTTTAGCCAGATTTTTTGTGCAATAGAAAGCAATAATAAAAATGATAGATCAAAATGAAATA < 1:3320096/91‑1 CTGGTTGAA‑GTCGTTACTATCATAGCGACATTTAGCCAGATTTTTTGTGCAATAGAAAGCAATAATAAAAATGATAGATCAAAATGAAATA < 1:3320081/91‑1 TGGTTGAA‑GTCGTTACTATCATAGCGACCTTTAGCCAGATTTTTTGTGCAATAGAAAGCAATAATAAAAATGATAGATCAAAATGAAATAC > 1:3027049/1‑91 GGTTGAA‑GTCGTTACTATCATAGCGACCTTTAGCCAGATTTTTTGTGCAATAGAAAGCAATAATAAAAATGATAGATCAAAATGAAATACA > 1:3132990/1‑91 GGTTGAA‑GTCGTTACTATCATAGCGACCTTTAGCCAGATTTTTTGTGCAATAGAAAGCAATAATAAAAATGATAGATCAAAATGAAATACA > 1:3132949/1‑91 GGTTGAA‑GTCGTTACTATCATAGCGACCTTTAGCCAGATTTTTTGTGCAATAGAAAGCAATAATAAAAATGATAGATCAAAATGAAATACA > 1:670353/1‑91 ATAACATGGCATGACTAATCCTTGTATATCCTGTCCTGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2761156‑2761249‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatctggTTGAA‑GTCGTTACTATCATAGCGACCTTTAGCCAGATTTTTTGTGCAATAGAAAGCAATAATAAAAATGATAGATCAAAATGAAATACA < USA300TCH1516_ALE/2761280‑2761192 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |