BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2761249	68 (0.690)	8 (0.090)	5/144	NT	11.9%	intergenic (‑251/+242)	citN/sirC	Citrate transporter/Precorrin‑2 dehydrogenase
*	?	USA300TCH1516_ALE	= 2761280	57 (0.640)	8 (0.090)	5/144	NT	11.9%	intergenic (‑282/+211)	citN/sirC	Citrate transporter/Precorrin‑2 dehydrogenase

Only 100 of 106 total aligned reads displayed.

TGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATT  >  USA300TCH1516_ALE/2761192‑2761370

tGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAAcc                                                                                          >  1:3132990‑M2/1‑89 (MQ=255)

tGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAAcc                                                                                          >  1:670353‑M2/1‑89 (MQ=255)

tGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAAcc                                                                                          >  1:3132949‑M2/1‑89 (MQ=255)

 gTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAAcca                                                                                         >  1:3027049‑M2/1‑88 (MQ=255)

 agataaaaagatacgtagaacaaacttaataaaataggtggataaattgAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCa                                                                                         >  1:3347696‑M1/50‑91 (MQ=255)

 agagaaaaagatacgtagaacaaacttaataaaataggtggataaattgAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCa                                                                                         >  1:1808625‑M1/50‑91 (MQ=255)

  tATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAATGTCGCTATGATAGTAACGAC‑TTCAAccag                                                                                        <  1:3320081‑M2/91‑5 (MQ=255)

  tATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAACGTCGCTATGATAGTAACGAC‑TTCAAccag                                                                                        <  1:3320096‑M2/91‑5 (MQ=255)

  tATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAACGTCGCTATGATAGTAACGAC‑TTCAAccag                                                                                        <  1:3322250‑M2/91‑5 (MQ=255)

  gagaaaaagatacgtagaacaaacttaataaaataggtggataaattgAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAg                                                                                        >  1:728333‑M1/49‑91 (MQ=255)

      tCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAAccagattt                                                                                    >  1:3127576‑M2/1‑83 (MQ=255)

       aaagatacgtagaacaaacttaataaaataggtggataaattgAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTc                                                                                   >  1:1374768‑M1/44‑91 (MQ=255)

        aTTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCa                                                                                  <  1:1233591/91‑1 (MQ=255)

         ttttGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCaa                                                                                 <  1:649261/91‑1 (MQ=255)

            tGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAAttt                                                                              <  1:3802620/91‑1 (MQ=255)

             gATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTa                                                                             >  1:1465444/1‑91 (MQ=255)

                cTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATcc                                                                          <  1:2585915/91‑1 (MQ=255)

                 tATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCa                                                                         >  1:3513842/1‑91 (MQ=255)

                 tATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCa                                                                         >  1:636030/1‑91 (MQ=255)

                 tATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCa                                                                         >  1:3513939/1‑91 (MQ=255)

                 tATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCa                                                                         >  1:1137665/1‑91 (MQ=255)

                  aTCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCAc                                                                        >  1:169584/1‑91 (MQ=255)

                  aTCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCAc                                                                        <  1:2431366/91‑1 (MQ=255)

                  aTCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCAc                                                                        <  1:3601897/91‑1 (MQ=255)

                     aTTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTa                                                                     >  1:1409181/1‑91 (MQ=255)

                       ttttATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTAtt                                                                   <  1:3816166/91‑1 (MQ=255)

                       ttttATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTAtt                                                                   <  1:344526/91‑1 (MQ=255)

                         ttattaTTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTAtttt                                                                 <  1:1314601/91‑1 (MQ=255)

                          tattatTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTtta                                                                >  1:1845677/1‑91 (MQ=255)

                          tattatTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTtta                                                                >  1:3935978/1‑91 (MQ=255)

                           attattGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTttat                                                               >  1:54650/1‑91 (MQ=255)

                           attattGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTttat                                                               >  1:3354370/1‑91 (MQ=255)

                            ttattGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTttatt                                                              >  1:3435587/1‑91 (MQ=255)

                             tattGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTttatta                                                             <  1:2878649/91‑1 (MQ=255)

                             tattGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTttatta                                                             <  1:3372330/91‑1 (MQ=255)

                              attGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTaa                                                            <  1:3716211/91‑1 (MQ=255)

                               ttGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAg                                                           <  1:151896/91‑1 (MQ=255)

                                tGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGt                                                          <  1:1206327/91‑1 (MQ=255)

                                    ttCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGt                                                      <  1:1946769/91‑1 (MQ=255)

                                    ttCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGt                                                      <  1:1946556/91‑1 (MQ=255)

                                    ttCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGt                                                      <  1:523306/91‑1 (MQ=255)

                                        aTTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTa                                                  <  1:535045/91‑1 (MQ=255)

                                        aTTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTa                                                  <  1:1641332/91‑1 (MQ=255)

                                         ttGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTAc                                                 <  1:1069490/91‑1 (MQ=255)

                                          tGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACg                                                <  1:1118940/91‑1 (MQ=255)

                                           gCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTTTCCACCTATTTTATTAAGTTTGTTCTACGt                                               <  1:379136/91‑1 (MQ=255)

                                           gCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGt                                               >  1:830458/1‑91 (MQ=255)

                                           gCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGt                                               <  1:379147/91‑1 (MQ=255)

                                           gCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGt                                               <  1:379195/91‑1 (MQ=255)

                                            cacaAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTa                                              >  1:2610965/1‑91 (MQ=255)

                                            cacaAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTa                                              >  1:2610829/1‑91 (MQ=255)

                                            cacaAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTa                                              <  1:1835564/91‑1 (MQ=255)

                                             acaAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTAt                                             >  1:794776/1‑91 (MQ=255)

                                                 aaaaTCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCttt                                         >  1:2798179/1‑91 (MQ=255)

                                                 aaaaTCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCttt                                         >  1:2793771/1‑91 (MQ=255)

                                                  AAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCtttt                                        <  1:1071581‑M1/91‑1 (MQ=255)

                                                  AAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCtttt                                        >  1:3061379‑M1/1‑91 (MQ=255)

                                                     TCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTtct                                     <  1:2430633‑M1/91‑1 (MQ=255)

                                                     TCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTtct                                     <  1:4100232‑M1/91‑1 (MQ=255)

                                                     TCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTtct                                     >  1:2913280‑M1/1‑91 (MQ=255)

                                                      cTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAAccagattttttgtgcaatagaaagcaataataaaaatgatagatcaaaatgaaata                                    <  1:548907‑M2/91‑57 (MQ=255)

                                                       TGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTctct                                   <  1:387934‑M1/91‑1 (MQ=255)

                                                       TGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTctct                                   <  1:1588124‑M1/91‑1 (MQ=255)

                                                        ggCTAAAGGTCGCTATGATAGTAACGAC‑TTCAAccagattttttgtgcaatagaaagcaataataaaaatgatagatcaaaatgaaataca                                  <  1:3620145‑M2/91‑59 (MQ=255)

                                                        ggCTAAAGGTCGCTATGATAGTAACGAC‑TTCAAccagattttttgtgcaatagaaagcaataataaaaatgatagatcaaaatgaaataca                                  <  1:640165‑M2/91‑59 (MQ=255)

                                                        ggCTAAAGGTCGCTATGATAGTAACGAC‑TTCAAccagattttttgtgcaatagaaagcaataataaaaatgatagatcaaaatgaaataca                                  <  1:3620128‑M2/91‑59 (MQ=255)

                                                        GGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTa                                  <  1:1028936‑M1/91‑1 (MQ=255)

                                                        GGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTa                                  <  1:146694‑M1/91‑1 (MQ=255)

                                                        GGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTa                                  <  1:312203‑M1/91‑1 (MQ=255)

                                                        GGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTa                                  <  1:2410562‑M1/91‑1 (MQ=255)

                                                        GGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTCCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTa                                  <  1:267476‑M1/91‑1 (MQ=255)

                                                         gCTAAAGGTCGCTATGATAGTAACGAC‑TTCAAccagattttttgtgcaatagaaagcaataataaaaatgatagatcaaaatgaaatacag                                 <  1:3360640‑M2/91‑60 (MQ=255)

                                                         GCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTAt                                 <  1:3437380‑M1/91‑1 (MQ=255)

                                                         GCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTAt                                 <  1:2966695‑M1/91‑1 (MQ=255)

                                                          cTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTAtt                                >  1:1692189/1‑91 (MQ=255)

                                                           tAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTg                               <  1:3938615/91‑1 (MQ=255)

                                                            aaaGGTCGCTATGATAGTAACGAC‑TTCAAccagattttttgtgcaatagaaagcaataataaaaatgatagatcaaaatgaaatacaggac                              <  1:2451644‑M2/91‑63 (MQ=255)

                                                            aaaGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGt                              >  1:2607955/1‑91 (MQ=255)

                                                                 tCGCTATGATAGTAACGAC‑TTCAAccagattttttgtgcaatagaaagcaataataaaaatgatagatcaaaatgaaatacaggacaggat                         <  1:2389578‑M2/91‑68 (MQ=255)

                                                                  cGCTATGATAGTAACGACCTTTAGccagattttttgtgcaatagaaagcaataataaaaatgatagatcaaaatgaaatacaggacaggat                         <  1:3056421‑M2/91‑68 (MQ=255)

                                                                  cGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATAtt                        >  1:1724445/1‑91 (MQ=255)

                                                                     tATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCat                     <  1:1017768/91‑1 (MQ=255)

                                                                     tATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCat                     <  1:3588273/91‑1 (MQ=255)

                                                                       tGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCatat                   <  1:3397001/91‑1 (MQ=255)

                                                                           aGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTaa               <  1:1918896/91‑1 (MQ=255)

                                                                           aGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTaa               >  1:1455163/1‑91 (MQ=255)

                                                                                cGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGc          >  1:286990/1‑91 (MQ=255)

                                                                                 gAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCa         <  1:1410888/91‑1 (MQ=255)

                                                                                  aC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCat        <  1:657717/91‑1 (MQ=255)

                                                                                   c‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCata       >  1:2868148/1‑91 (MQ=255)

                                                                                     ttCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCatat      <  1:1275932/91‑1 (MQ=255)

                                                                                      tCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATc     >  1:3100043/1‑91 (MQ=255)

                                                                                       cAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCa    <  1:199198/91‑1 (MQ=255)

                                                                                       cAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCa    <  1:198643/91‑1 (MQ=255)

                                                                                       cAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCa    <  1:199346/91‑1 (MQ=255)

                                                                                       cAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCa    >  1:1620704/1‑91 (MQ=255)

                                                                                        aaCCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCAt   <  1:1783801/91‑1 (MQ=255)

                                                                                        aaCCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCAt   <  1:1074520/91‑1 (MQ=255)

                                                                                        aaCCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCAt   >  1:362446/1‑91 (MQ=255)

                                                                                         aCCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTTTCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCAtt  >  1:3315962/1‑91 (MQ=255)

TGTATTTCATTTTGATCTATCATTTTTATTATTGCTTTCTATTGCACAAAAAATCTGGCTAAAGGTCGCTATGATAGTAACGAC‑TTCAACCAGATTTCAATTTATCCACCTATTTTATTAAGTTTGTTCTACGTATCTTTTTCTCTATTGTAATATTCATATTTAAAACGCATATCATT  >  USA300TCH1516_ALE/2761192‑2761370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.