| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2778362 = | 78 (0.790) | 6 (0.070) | 5/142 | NT | 7.5% | coding (918/942 nt) | arcC2 | Carbamate kinase 2 |
| ? | USA300TCH1516_ALE | 2778404 = | 79 (0.910) | coding (876/942 nt) | arcC2 | Carbamate kinase 2 | |||||
CCAAAAATAGAAGCTGCGATACGATTTGTTGAAAGTGGGGAAAACAAAAAAGTTATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGATTGGTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2778460‑2778362‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attggtaatGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCTTGTGC > USA300TCH1516_ALE/2778404‑2778493 CCAAAAATAGAAGCTGCGATACGATTTGTTGAAAGTGGGGAAAACAAAAAAGTTATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGA < 1:2456981/91‑1 AAAAATAGAAGCTGCGATACGATTTGTTGAAAGTGGGGAAAACAAAAAAGTTATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGATT > 1:1369339/1‑91 AAAAATAGAAGCTGCGATACGATTTGTTGAAAGTGGGGAAAACAAAAAAGTTATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGATT > 1:1369351/1‑91 AAAAATAGAAGCTGCGATACGATTTGTTGAAAGTGGGGAAAACAAAAAAGTTATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGATT > 1:1372188/1‑91 AAAAATAGAAGCTGCGATACGATTTGTTGAAAGTGGGGAAAACAAAAAAGTTATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGATT > 1:1369315/1‑91 AAAAATACAAGCTGCGATACGATTTGTTGAAAGTGGGGAAAACAAAAAAGTTATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGATT < 1:2075805/91‑1 AAAATAGAAGCTGCGATACGATTTGTTGAAAGTGGGGAAAACAAAAAAGTTATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGATTG > 1:2008258/1‑91 AAAATAGAAGCTGCGATACGATTTGTTGAAAGTGGGGAAAACAAAAAAGTTATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGATTG > 1:4097318/1‑91 AAATAGAAGCTGCGATACGATTTGTTGAAAGTGGGGAAAACAAAAAAGTTATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGATTGG < 1:2026759/91‑1 AAATAGAAGCTGCGATACGATTTGTTGAAAGTGGGGAAAACAAAAAAGTTATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGATTGG < 1:4024788/91‑1 AATAGAAGCTGCGATACGATTTGTTGAAAGTGGGGAAAACAAAAAAGTTATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGATTGGT > 1:1677271/1‑91 AATAGAAGCTGCGATACGATTTGTTGAAAGTGGGGAAAACAAAAAAGTTATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGATTGGT < 1:3615911/91‑1 ATAGAAGCTGCGATACGATTTGTTGAAAGTGGGGAAAACAAAAAAGTTATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGATTGGTA < 1:154852/91‑1 TAGAAGCTGCGATACGATTTGTTGAAAGTGGGGAAAACAAAAAAGTTATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGATTGGTAA < 1:1531117/91‑1 AGAAGCTGCGATACGATTTGTTGAAAGTGGGGAAAACAAAAAAGTTATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGATTGGTAAT > 1:4114875/1‑91 ATCATTACCAATTTAGAGCGGGCATACGAAGCTTTGATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCT > 1:3414971/1‑91 ATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCT > 1:3415052/1‑91 TACCAATTTAGAGCAGGCATACGAAGCTTTGATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTAT > 1:875300/1‑91 CAATTTAGAGCAGGCATACGAAGCTTTGATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTT > 1:2990283/1‑91 AATTTAGAGCAGGCATACGAAGCTTTGATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTT > 1:3114466/1‑91 TTTAGAGCAGGCATACGAAGCTTTGATTGGTAATGATGACTTTTTTGTTTTACCCACTTTCAACAGATCGTATCGCAGCTTCTATATTTGG > 1:3858864/1‑91 ATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTA > 1:729279/1‑91 TTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTAC > 1:3281821/1‑91 TGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACC > 1:232771/1‑91 TGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACC < 1:706430/91‑1 GGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCT > 1:2771280/1‑91 GGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCT > 1:2320346/1‑91 GTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCTT > 1:2786846/1‑91 GTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCTT < 1:2746113/91‑1 GTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCTT > 1:1781444/1‑91 TAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCTTt > 1:566218/1‑90 AATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCTTGT > 1:3249030/1‑91 ATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCTTGTG > 1:3687423/1‑91 ATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCTTGTG > 1:3687734/1‑91 ATGACAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCTTGTG > 1:3281653/1‑91 TGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCTTGTGC > 1:95137/1‑91 CCAAAAATAGAAGCTGCGATACGATTTGTTGAAAGTGGGGAAAACAAAAAAGTTATCATTACCAATTTAGAGCAGGCATACGAAGCTTTGATTGGTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2778460‑2778362‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attggtaatGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCTTGTGC > USA300TCH1516_ALE/2778404‑2778493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |