BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2778362 =	78 (0.790)	6 (0.070)	5/142	NT	7.5%	coding (918/942 nt)	arcC2	Carbamate kinase 2
*	?	USA300TCH1516_ALE	2778404 =	79 (0.910)	6 (0.070)	5/142	NT	7.5%	coding (876/942 nt)	arcC2	Carbamate kinase 2

Only 100 of 126 total aligned reads displayed.

ATGTTTTGTCGCGTGATAAAGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCTTGTGC  >  USA300TCH1516_ALE/2778315‑2778493

aTGTTTTGTCGCGTGATAAAGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGa                                                                                          >  1:153713/1‑91 (MQ=255)

aTGTTTTGTCGCGTGATAAAGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGa                                                                                          >  1:1914961/1‑91 (MQ=255)

 tGTTTTGTCGCGTGATAAAGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGAt                                                                                         <  1:263099/91‑1 (MQ=255)

 tGTTTTGTCGCGTGATAAAGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGAt                                                                                         <  1:608600/91‑1 (MQ=255)

 agctgcgatacgatttgttgaaagtggggaaaacaaaaaagttatcATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGAt                                                                                         >  1:3415052‑M1/47‑91 (MQ=255)

     ttGTCGCGTGATAAAGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACt                                                                                     >  1:372456/1‑91 (MQ=255)

      tGTCGCGTGATAAAGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACtt                                                                                    >  1:196596/1‑91 (MQ=255)

       gTCGCGTGATAGAGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACttt                                                                                   <  1:1629410/91‑1 (MQ=255)

       gTCGCGTGATAAAGTGCTACATGTGAATGTGTGTACCTTTATTAGCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACttt                                                                                   <  1:3292431/91‑1 (MQ=255)

        tCGCGTGATAAAGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACtttt                                                                                  <  1:453623/91‑1 (MQ=255)

        tCGCGTGATAAAGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACtttt                                                                                  <  1:211321/91‑1 (MQ=255)

         cgcgTGATAAAGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACttttt                                                                                 <  1:2782981/91‑1 (MQ=255)

         cgcgTGATAAAGTGCTACATGTGAATGTGTGTACCTATATTACCAATCATGGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACttttt                                                                                 <  1:1717574/91‑1 (MQ=255)

           cgTGATAAAGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTg                                                                               <  1:3921196/91‑1 (MQ=255)

            gTGATAAAGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGt                                                                              <  1:3257997/91‑1 (MQ=255)

            gTGATAAAGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGt                                                                              >  1:4088933/1‑91 (MQ=255)

             tGATAAAGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGtt                                                                             >  1:1661789/1‑91 (MQ=255)

             tGATAAAGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGtt                                                                             >  1:144049/1‑91 (MQ=255)

                 aaaGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTcc                                                                         <  1:2179479/91‑1 (MQ=255)

                  aaGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTccc                                                                        <  1:1004098/91‑1 (MQ=255)

                   aGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTcccc                                                                       <  1:1654869/91‑1 (MQ=255)

                   aGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTcccc                                                                       >  1:3653533/1‑91 (MQ=255)

                      gCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCACTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACt                                                                    <  1:3490407/91‑1 (MQ=255)

                        tACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACttt                                                                  <  1:3139620/91‑1 (MQ=255)

                          cATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTca                                                                >  1:3630625/1‑91 (MQ=255)

                           aTGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTcaa                                                               <  1:2818009/91‑1 (MQ=255)

                              tgAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTcaacaa                                                            <  1:501151/91‑1 (MQ=255)

                                  tgtgtgTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCg                                                        <  1:594542/91‑1 (MQ=255)

                                  tgtgtgTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCg                                                        <  1:2802804/91‑1 (MQ=255)

                                  tgtgtgTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCg                                                        >  1:2609995/1‑91 (MQ=255)

                                  tgtgtgTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCg                                                        >  1:2462927/1‑91 (MQ=255)

                                  tgtgtgTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCg                                                        <  1:594689/91‑1 (MQ=255)

                                      tgtACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATc                                                    >  1:92277/1‑91 (MQ=255)

                                      tgtACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATc                                                    >  1:1417774/1‑91 (MQ=255)

                                        tACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGc                                                  >  1:3089212/1‑91 (MQ=255)

                                          ccTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAg                                                <  1:112357/91‑1 (MQ=255)

                                            tttATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCt                                              <  1:150643/91‑1 (MQ=255)

                                            tttATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCt                                              <  1:3830257/91‑1 (MQ=255)

                                            atcattaccaatttagagcgggcatacgaagctttgattggtaatGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCt                                              >  1:3414971‑M2/46‑91 (MQ=255)

                                            atcattaccaatttagagcaggcatacgaagctttgattggtaatGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCt                                              >  1:3415052‑M2/46‑91 (MQ=255)

                                             ttattaCCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCtt                                             <  1:1131741/91‑1 (MQ=255)

                                             ttattaCCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCtt                                             <  1:1888711/91‑1 (MQ=255)

                                             ttattaCCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCtt                                             <  1:2711781/91‑1 (MQ=255)

                                             ttattaCCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCtt                                             <  1:2711818/91‑1 (MQ=255)

                                             ttattaCCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCtt                                             <  1:1434394/91‑1 (MQ=255)

                                             ttattaCCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCtt                                             >  1:243436/1‑91 (MQ=255)

                                              tattaCCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTc                                            <  1:3380152/91‑1 (MQ=255)

                                              tattaCCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTc                                            >  1:749027/1‑91 (MQ=255)

                                               ATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCt                                           >  1:4114875‑M1/1‑91 (MQ=255)

                                                 taccaatttagagcaggcatacgaagctttgattggtaatGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTAt                                         >  1:875300‑M2/41‑91 (MQ=255)

                                                 TACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTAt                                         <  1:154852‑M1/91‑1 (MQ=255)

                                                  ACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTAtt                                        <  1:3615911‑M1/91‑1 (MQ=255)

                                                  ACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTAtt                                        >  1:1677271‑M1/1‑91 (MQ=255)

                                                   CCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTAttt                                       <  1:4024788‑M1/91‑1 (MQ=255)

                                                   CCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTAttt                                       <  1:2026759‑M1/91‑1 (MQ=255)

                                                    caatttagagcaggcatacgaagctttgattggtaatGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTAtttt                                      >  1:2990283‑M2/38‑91 (MQ=255)

                                                    CAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTAtttt                                      >  1:2008258‑M1/1‑91 (MQ=255)

                                                     aatttagagcaggcatacgaagctttgattggtaatGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTAttttt                                     >  1:3114466‑M2/37‑91 (MQ=255)

                                                     AATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTGTAttttt                                     <  1:2075805‑M1/91‑1 (MQ=255)

                                                     AATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTAttttt                                     >  1:1372188‑M1/1‑91 (MQ=255)

                                                     AATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTAttttt                                     >  1:1369339‑M1/1‑91 (MQ=255)

                                                     AATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTAttttt                                     >  1:1369315‑M1/1‑91 (MQ=255)

                                                       TCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTgg                                   <  1:2456981‑M1/91‑1 (MQ=255)

                                                        cAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGc                                  <  1:3837929/91‑1 (MQ=255)

                                                        cAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGc                                  <  1:2502634/91‑1 (MQ=255)

                                                         aaaGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCa                                 >  1:2746132/1‑91 (MQ=255)

                                                          aaGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCaa                                <  1:1381691/91‑1 (MQ=255)

                                                           aGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAAc                               >  1:2903219/1‑91 (MQ=255)

                                                           aGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAAc                               >  1:412770/1‑91 (MQ=255)

                                                            gCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACa                              <  1:3717708/91‑1 (MQ=255)

                                                             cTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACAt                             >  1:3814663/1‑91 (MQ=255)

                                                             cTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACAt                             <  1:706932/91‑1 (MQ=255)

                                                              ttCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATc                            >  1:1287730/1‑91 (MQ=255)

                                                              ttCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATc                            >  1:1407188/1‑91 (MQ=255)

                                                               tCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCg                           >  1:2858274/1‑91 (MQ=255)

                                                                   aTGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATcc                       >  1:3569788/1‑91 (MQ=255)

                                                                   aTGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATcc                       <  1:864292/91‑1 (MQ=255)

                                                                   aTGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATcc                       <  1:2235996/91‑1 (MQ=255)

                                                                    tGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCt                      <  1:3366332/91‑1 (MQ=255)

                                                                    tGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCt                      <  1:3366137/91‑1 (MQ=255)

                                                                      ccTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTc                    >  1:688176/1‑91 (MQ=255)

                                                                      ccTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTc                    >  1:1787950/1‑91 (MQ=255)

                                                                       cTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTcc                   >  1:1295364/1‑91 (MQ=255)

                                                                       cTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTcc                   >  1:1533840/1‑91 (MQ=255)

                                                                        tGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCca                  <  1:434387/91‑1 (MQ=255)

                                                                        tGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCca                  >  1:795911/1‑91 (MQ=255)

                                                                          ctctAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCcaca                <  1:4045874/91‑1 (MQ=255)

                                                                            ctAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACaaa              >  1:2765599/1‑91 (MQ=255)

                                                                               aaTTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACtt           >  1:740946/1‑91 (MQ=255)

                                                                               aaTTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACtt           >  1:1077195/1‑91 (MQ=255)

                                                                               aaTTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACtt           >  1:1395307/1‑91 (MQ=255)

                                                                                attggtaatGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTa          >  1:729279‑M2/10‑91 (MQ=255)

                                                                                  tggtaatGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTAcc        <  1:706430‑M2/84‑1 (MQ=255)

                                                                                   ggtaatGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCt       >  1:2320346‑M2/7‑91 (MQ=255)

                                                                                   ggtaatGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCt       >  1:2771280‑M2/7‑91 (MQ=255)

                                                                                     taatGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACcttt     >  1:566218‑M2/5‑90 (MQ=255)

                                                                                      aatGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCTtgt    >  1:3249030‑M2/4‑91 (MQ=255)

                                                                                       atGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCTtgtg   >  1:3687734‑M2/3‑91 (MQ=255)

                                                                                       atGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCTtgtg   >  1:3687423‑M2/3‑91 (MQ=255)

                                                                                       atGACAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCTtgtg   >  1:3281653‑M2/3‑91 (MQ=255)

ATGTTTTGTCGCGTGATAAAGTGCTACATGTGAATGTGTGTACCTTTATTACCAATCAAAGCTTCGTATGCCTGCTCTAAATTGGTAATGATAACTTTTTTGTTTTCCCCACTTTCAACAAATCGTATCGCAGCTTCTATTTTTGGCAACATCGATCCTTCCACAAACTTACCTTGTGC  >  USA300TCH1516_ALE/2778315‑2778493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.