| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2787510 | 93 (0.950) | 7 (0.080) | 6/142 | NT | 8.2% | intergenic (+56/‑184) | zipA_3/manR_2 | Cell division protein ZipA/Transcriptional regulator ManR |
| ? | USA300TCH1516_ALE | = 2787537 | 74 (0.850) | intergenic (+83/‑157) | zipA_3/manR_2 | Cell division protein ZipA/Transcriptional regulator ManR | |||||
GCCTTCTAAACAAACACCTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2787412‑2787510‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacagcagtAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTTTTCTGAATTTATGCATCTGGTACTTGTGGACGTATCAGGCAAATGATTAATTT < USA300TCH1516_ALE/2787537‑2787448 GCCTTCTAAACAAACACCTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAA > 1:2004120/1‑91 CCTTCTAAACAAACACCTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAA > 1:998590/1‑91 CTTCTAAACAAACACCTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAAC < 1:1295807/91‑1 CTAAACAAACACCTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGC < 1:3248789/91‑1 AAACAAACACCTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAG > 1:2466102/1‑91 CTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTAAGATATTTCAAATAGAAAAATAT < 1:1909183/91‑1 AAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTAAGATATTTCAAATAGAAAAATATCT < 1:3955330/91‑1 TTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTG < 1:2801261/91‑1 TAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGC < 1:2292378/91‑1 TAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAACTCAGAAAAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGC < 1:3698341/91‑1 AATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCT < 1:1165834/91‑1 TGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTTTTC < 1:1802336/91‑1 AACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTTTTCTGAATTTATGCATCTGGTACTTGTGGACGTATCAGGCAAATG < 1:2577086/91‑1 AACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTTTTCTGAATTTATGCATCTGGTACTTGTGGACGTATCAGGCAAATG < 1:3616527/91‑1 ACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTTTTCTGAATTTATGCATCTGGTACTTGTGGACGTATCAGGCAAATGA > 1:3334420/1‑91 CAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTTTTCTGAATTTATGCATCTGGCACTTGTGGACGTATCAGGCAAATGAT > 1:211996/1‑91 CAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTTTTCTGAATTTATGCATCTGGTACTTGTGGACGTATCAGGCAAATGATTAA < 1:3941791/91‑1 GTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTTTTCTGAATTTATGCATCTGGTACTTGTGGACGTATCAGGCAAATGATTAATT > 1:3712807/1‑91 GTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTTTTCTGAATTTATGCATCTGGTACTTGTGGACGTATCAGGCAAATGATTAATT < 1:541946/91‑1 TAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTTTTCTGAATTTATGCATCTGGTACTTGTGGACGTATCAGGCAAATGATTAATTT > 1:1337131/1‑91 GCCTTCTAAACAAACACCTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2787412‑2787510‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacagcagtAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTTTTCTGAATTTATGCATCTGGTACTTGTGGACGTATCAGGCAAATGATTAATTT < USA300TCH1516_ALE/2787537‑2787448 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |