| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2787510 | 93 (0.950) | 7 (0.080) | 6/142 | NT | 8.2% | intergenic (+56/‑184) | zipA_3/manR_2 | Cell division protein ZipA/Transcriptional regulator ManR |
| ? | USA300TCH1516_ALE | = 2787537 | 74 (0.850) | intergenic (+83/‑157) | zipA_3/manR_2 | Cell division protein ZipA/Transcriptional regulator ManR | |||||
Only 100 of 156 total aligned reads displayed.
AACAAACACCTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAAT > USA300TCH1516_ALE/2787420‑2787599 | acatgagagcttatacatacgtcaatgacattaaagcgaacttttatatgattttaacagagtgcgaattatgcaaataaagAACAGCAGt < 1:1100353‑M1/9‑1 (MQ=255)acatgagagcttatacatacatcaatgacattaaagcgaacttttatatgattttaacagagtgcgaattatgcaaataaagAACAGCAGt > 1:3887546‑M1/83‑91 (MQ=255) caaacaCCTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTga > 1:664429/1‑91 (MQ=255) caaacaCCTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTga < 1:522114/91‑1 (MQ=255) caaacaCCTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTga < 1:4128179/91‑1 (MQ=255) cacCTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGata < 1:358782/91‑1 (MQ=255) acCTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGatat < 1:1483989/91‑1 (MQ=255) ccTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATAtt > 1:2019008/1‑91 (MQ=255) ccTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATAtt > 1:2911477/1‑91 (MQ=255) cTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATAttt < 1:1193186/91‑1 (MQ=255) cTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATAttt < 1:1984108/91‑1 (MQ=255) cTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATAttt < 1:2267087/91‑1 (MQ=255) cTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATAttt < 1:2267125/91‑1 (MQ=255) cAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATAttttt > 1:584508/1‑91 (MQ=255) cAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATAttttt > 1:1710933/1‑91 (MQ=255) aaGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTc < 1:3958736/91‑1 (MQ=255) gCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTa > 1:3116823/1‑91 (MQ=255) gCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTa > 1:2805852/1‑91 (MQ=255) gCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTa > 1:1596535/1‑91 (MQ=255) cacaATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTAt < 1:2616605/91‑1 (MQ=255) cacaATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTAt < 1:358463/91‑1 (MQ=255) acaATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTAtt < 1:1111359/91‑1 (MQ=255) acaATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTAtt < 1:1111330/91‑1 (MQ=255) aaTCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTg > 1:951314/1‑91 (MQ=255) aaTCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTg > 1:2906869/1‑91 (MQ=255) aTCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGa > 1:3244439/1‑91 (MQ=255) aTCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGa > 1:3714537/1‑91 (MQ=255) aTCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGa > 1:3704168/1‑91 (MQ=255) cACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGaaa < 1:1016270/91‑1 (MQ=255) cACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGaaa > 1:1294161/1‑91 (MQ=255) aCCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAat < 1:1182427/91‑1 (MQ=255) aCCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAat > 1:2331231/1‑91 (MQ=255) gacattaaagcgaacttttatatgattttaacagagtgcgaattatgcaaataaagAACAGCAGTGAGATATTTTTCTATTTGAAATATCt > 1:2660795‑M1/57‑91 (MQ=255) aaaaTTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCtt < 1:3887406/91‑1 (MQ=255) aaaTTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTa > 1:1337131‑M2/1‑90 (MQ=255) aaTTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTac < 1:541946‑M2/91‑3 (MQ=255) aaTTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTac > 1:3712807‑M2/1‑89 (MQ=255) ttAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTaagatatttcaaatagaaaaatatctcactg < 1:2801261‑M1/91‑32 (MQ=255) ttAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTactg < 1:3941791‑M2/91‑5 (MQ=255) taaagcgaacttttatatgattttaacagagtgcgaattatgcaaataaagAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTActg > 1:782970‑M1/52‑91 (MQ=255) aagcgaacttttatatgattttaacagagtgcgaattatgcaaataaagAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTActgct > 1:1821884‑M1/50‑91 (MQ=255) aaTCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTaagatatttcaaatagaaaaatatctcactgct < 1:1165834‑M1/91‑34 (MQ=255) aTCATTTGCCTGATACGTCCACAAGTGCCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTactgctg > 1:211996‑M2/1‑84 (MQ=255) gcgaacttttatatgattttaacagagtgcgaattatgcaaataaagAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGt > 1:2203271‑M1/48‑91 (MQ=255) gcgaacttttatatgattttaacagagtgcgaattatgcaaataaagAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGt > 1:2204245‑M1/48‑91 (MQ=255) gcgaacttttatatgattttaacagagtgcgaattatgcaaataaagAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGt > 1:1032477‑M1/48‑91 (MQ=255) gcgaacttttatatgattttaacagagtgcgaattatgcaaataaagAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGt > 1:3649046‑M1/48‑91 (MQ=255) aTTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTc < 1:3766589/91‑1 (MQ=255) tttGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCt > 1:2942536/1‑91 (MQ=255) aacttttatatgattttaacagagtgcgaattatgcaaataaagAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCt > 1:3108013‑M1/45‑91 (MQ=255) tGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCttt > 1:1132904/1‑91 (MQ=255) tGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCttt > 1:1128509/1‑91 (MQ=255) ccTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTAt > 1:3366772/1‑91 (MQ=255) cTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTAtt < 1:1531192/91‑1 (MQ=255) cTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTAtt < 1:1531277/91‑1 (MQ=255) aaTACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTg < 1:114537/90‑1 (MQ=255) tACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCa < 1:353100/91‑1 (MQ=255) aCGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCAt < 1:611683/91‑1 (MQ=255) aCGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTANTTGANATATCTTACTGCTGTTCTTTATTTGCAt > 1:1094128/1‑91 (MQ=255) ccACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAAtt < 1:489075/91‑1 (MQ=255) cacaAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTc > 1:876963/1‑91 (MQ=255) cacaAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTc > 1:1777291/1‑91 (MQ=255) acaAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCg < 1:3008633/91‑1 (MQ=255) aGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCAc > 1:4026376/1‑91 (MQ=255) aCCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCActct < 1:3634003/91‑1 (MQ=255) ccAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTg < 1:1996088/91‑1 (MQ=255) ccAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTg > 1:1325837/1‑91 (MQ=255) cAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGt > 1:3442749/1‑91 (MQ=255) aGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGtt > 1:3538932/1‑91 (MQ=255) aGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGtt > 1:4118825/1‑91 (MQ=255) tGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTaaa < 1:2656044/91‑1 (MQ=255) aaaTTCAGATAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCat < 1:3974459/91‑1 (MQ=255) aaaTTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCat < 1:763354/91‑1 (MQ=255) aTTCAGAAAAACCGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCctat > 1:3208285/1‑91 (MQ=255) aTTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCatat < 1:1407380/91‑1 (MQ=255) aTTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCatat < 1:2798225/91‑1 (MQ=255) gAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTactgctgtttttctgaatttatgcatctggtacttgtggacgtatcaggca < 1:1802336‑M2/91‑52 (MQ=255) gAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAg > 1:2592064/1‑91 (MQ=255) gAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAg > 1:1774748/1‑91 (MQ=255) gAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAg > 1:1252985/1‑91 (MQ=255) gAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAg > 1:1252561/1‑91 (MQ=255) aaaaaCAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATGAAAGt > 1:2827729/1‑91 (MQ=255) aaaaCAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGtt > 1:510322/1‑91 (MQ=255) aaaaCAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGtt < 1:1546643/91‑1 (MQ=255) aaaCAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTc > 1:2788975/1‑91 (MQ=255) aaCAGCAGTaagatatttcaaatagaaaaatatctcactgctgtttttctgaatttatgcatctggtacttgtggacgtatcaggcaaatg < 1:2577086‑M1/91‑83 (MQ=255) aaCAGCAGTaagatatttcaaatagaaaaatatctcactgctgtttttctgaatttatgcatctggtacttgtggacgtatcaggcaaatg < 1:3616527‑M1/91‑83 (MQ=255) aCAGCAGTaagatatttcaaatagaaaaatatctcactgctgtttttctgaatttatgcatctggtacttgtggacgtatcaggcaaatga > 1:3334420‑M1/1‑8 (MQ=255) ACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGc > 1:476493‑M1/1‑91 (MQ=255) CAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCt < 1:1830485‑M1/91‑1 (MQ=255) CAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCt < 1:1831312‑M1/91‑1 (MQ=255) agcagTGAGATATTTTTCTATTTGAAATATCTTactgctgtttttctgaatttatgcatctggtacttgtggacgtatcaggcaaatgatt < 1:1165834‑M2/91‑59 (MQ=255) gcagTGAGATATTTTTCTATTTGAAATATCTTactgctgtttttctgagtttatgcatctggtacttgtggacgtatcaggcaaatgatta < 1:3698341‑M2/91‑60 (MQ=255) gcagTGAGATATTTTTCTATTTGAAATATCTTactgctgtttttctgaatttatgcatctggtacttgtggacgtatcaggcaaatgatta < 1:2292378‑M2/91‑60 (MQ=255) GCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCttt < 1:2131713‑M1/91‑1 (MQ=255) cagTaagatatttcaaatagaaaaatatctcactgctgtttttctgaatttatgcatctggtacttgtggacgtatcaggcaaatgattaa < 1:3941791‑M1/91‑88 (MQ=255) CAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTa > 1:809929‑M1/1‑91 (MQ=255) CAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTa > 1:3920858‑M1/1‑91 (MQ=255) CAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTa > 1:3920964‑M1/1‑91 (MQ=255) GTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAAt < 1:707027‑M1/91‑1 (MQ=255) | AACAAACACCTCAAGCACAATCACCTAAAAATTAATCATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAAT > USA300TCH1516_ALE/2787420‑2787599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |