| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2830738 | 95 (0.970) | 6 (0.070) | 4/144 | NT | 6.0% | coding (1927/2046 nt) | lipA_2 | Lipase 1 |
| ? | USA300TCH1516_ALE | = 2830760 | 101 (1.140) | coding (1905/2046 nt) | lipA_2 | Lipase 1 | |||||
GCTTTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2830642‑2830738‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctacaaaACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGCATCA < USA300TCH1516_ALE/2830760‑2830674 GCTTTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGCACTGTCTTGTCC > 1:4065109/1‑91GCTTTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCC > 1:3091208/1‑91 TTTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTA < 1:363448/91‑1 TTTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTA > 1:3608615/1‑91 TTTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTA < 1:1825522/91‑1 TTTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTA < 1:3015056/91‑1 TTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTAC < 1:1636684/91‑1 TTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTAC < 1:3442992/91‑1 CAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAA > 1:1873744/1‑91 CAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAA > 1:3430749/1‑91 CAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTATATCAGAACTGTCTTGTCCTACAAA > 1:1617960/1‑91 CAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTATATCAGAACTGTCTTGTCCTACAAA > 1:1618050/1‑91 TAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAACATGATTGGGATCATGTTGAC < 1:76707/91‑1 TAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAACATGATTGGGATCATGTTGAC < 1:1415176/91‑1 AAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAACATGATTGGGATCATGTTGACT < 1:1623208/91‑1 TGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCCGAACTGTCTTGTCCTACAAAACATGATTGGGATCATGTTGACTTTG < 1:3293868/91‑1 GATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAACATGATTGGGATCATGTTGACTTTGT < 1:4002961/91‑1 GATGCCAAAAAGCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAACATGATTGGGATCATGTTGACTTTGT < 1:4003615/91‑1 CCTACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGC < 1:2928842/91‑1 CCTACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGC > 1:2465828/1‑91 CCTACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGC < 1:239671/91‑1 CCTACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGC < 1:660176/91‑1 CCTACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGC < 1:239306/91‑1 CCTACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGC < 1:2031073/91‑1 CCTACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGC < 1:2763895/91‑1 CTACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGCA < 1:3612868/91‑1 CTACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGCA > 1:3879053/1‑91 CTACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGCA > 1:3219180/1‑91 TACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGCAT < 1:3907788/91‑1 TACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGCAT < 1:3850551/91‑1 CAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGCATCA > 1:3270566/1‑91 CAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGCATCA < 1:1286241/91‑1 CAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGCATCA < 1:1286194/91‑1 GCTTTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2830642‑2830738‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctacaaaACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGCATCA < USA300TCH1516_ALE/2830760‑2830674 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |