BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2830738	95 (0.970)	6 (0.070)	4/144	NT	6.0%	coding (1927/2046 nt)	lipA_2	Lipase 1
*	?	USA300TCH1516_ALE	= 2830760	101 (1.140)	6 (0.070)	4/144	NT	6.0%	coding (1905/2046 nt)	lipA_2	Lipase 1

Only 100 of 143 total aligned reads displayed.

TAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAGAAGAAATAACG  >  USA300TCH1516_ALE/2830670‑2830850

tAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGt                                                                                            <  1:263465/91‑1 (MQ=255)

   taatcaagcttatacaaaagcgacagataaaattcaaaaaggcatttggcaagtgacgCCTACAAAGTCAACATGATCCCAATCATGtttt                                                                                         >  1:1231723‑M1/59‑91 (MQ=255)

    tgatgCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttg                                                                                        >  1:3270566‑M2/1‑87 (MQ=255)

    tgatgCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttg                                                                                        <  1:1286194‑M2/91‑5 (MQ=255)

     atcaagcttatacaaaagcgacagataaaattcaaaaaggcatttggcaagtgacgCCTACAAAGTCAACATGATCCCAATCATGTTTTGt                                                                                       >  1:1085854‑M1/57‑91 (MQ=255)

      tcaagcttatacaaaagcgacagataaaattcaaaaaggcatttggcaagtgacgCCTACAAAGTCAACATGATCCCAATCATGTTTTGTa                                                                                      >  1:2148390‑M1/56‑91 (MQ=255)

      atgCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgta                                                                                      <  1:3850551‑M2/91‑7 (MQ=255)

       tgCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgtag                                                                                     >  1:3879053‑M2/1‑84 (MQ=255)

        gCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgtagg                                                                                    <  1:2928842‑M2/91‑9 (MQ=255)

        gCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgtagg                                                                                    <  1:2031073‑M2/91‑9 (MQ=255)

        gCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgtagg                                                                                    >  1:2465828‑M2/1‑83 (MQ=255)

        gCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgtagg                                                                                    <  1:2763895‑M2/91‑9 (MQ=255)

        gCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgtagg                                                                                    <  1:660176‑M2/91‑9 (MQ=255)

         ccAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGc                                                                                   <  1:3044833/91‑1 (MQ=255)

          cAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCg                                                                                  <  1:1227993/91‑1 (MQ=255)

          cAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCg                                                                                  <  1:2887448/91‑1 (MQ=255)

          cAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCg                                                                                  <  1:2887725/91‑1 (MQ=255)

           aaaaaTCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGt                                                                                 >  1:2673720/1‑91 (MQ=255)

              aaTCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCAc                                                                              >  1:3777690/1‑91 (MQ=255)

                  ttGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGc                                                                          >  1:354022/1‑91 (MQ=255)

                   tGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGcc                                                                         >  1:2303422/1‑91 (MQ=255)

                    gTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCa                                                                        >  1:1267432/1‑91 (MQ=255)

                    gTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCa                                                                        <  1:3422443/91‑1 (MQ=255)

                    gTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCa                                                                        >  1:1854945/1‑91 (MQ=255)

                     tAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCaa                                                                       >  1:1402476/1‑91 (MQ=255)

                      aaTTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCaaa                                                                      <  1:278240/91‑1 (MQ=255)

                      aaTTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCaaa                                                                      <  1:3645084/91‑1 (MQ=255)

                      aaTTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCaaa                                                                      <  1:1060668/91‑1 (MQ=255)

                      aaTTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGAGCCCAATCATGTTTTGTAGGCGTCACTTGCCaaa                                                                      <  1:3120928/91‑1 (MQ=255)

                          cttctCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGcc                                                                  <  1:613403/91‑1 (MQ=255)

                             ctctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCttt                                                               <  1:4039070/91‑1 (MQ=255)

                             ctctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCttt                                                               <  1:3934570/91‑1 (MQ=255)

                              tctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCtttt                                                              <  1:659095/91‑1 (MQ=255)

                              tctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCtttt                                                              <  1:2300663/91‑1 (MQ=255)

                               ctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCttttt                                                             >  1:3540241/1‑91 (MQ=255)

                               ctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCttttt                                                             <  1:557074/91‑1 (MQ=255)

                               ctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCttttt                                                             >  1:2395423/1‑91 (MQ=255)

                                 tgtgCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGa                                                           >  1:823463/1‑91 (MQ=255)

                                  gtgCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGaa                                                          >  1:1492714/1‑91 (MQ=255)

                                    gcgcACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAAtt                                                        <  1:1101098/91‑1 (MQ=255)

                                       cACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTa                                                     >  1:1897735/1‑91 (MQ=255)

                                         cTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATc                                                   >  1:3932848/1‑91 (MQ=255)

                                          tGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCt                                                  <  1:3602230/91‑1 (MQ=255)

                                           gTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTg                                                 <  1:2426458/91‑1 (MQ=255)

                                              tCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCg                                              >  1:3441536/1‑91 (MQ=255)

                                                 gAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCtt                                           >  1:1672475/1‑91 (MQ=255)

                                                 gAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCtt                                           >  1:1044335/1‑91 (MQ=255)

                                                  aaCTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCttt                                          <  1:1055229/91‑1 (MQ=255)

                                                   aCTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCtttt                                         <  1:2995047/91‑1 (MQ=255)

                                                   aCTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCtttt                                         <  1:2994560/91‑1 (MQ=255)

                                                    cTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTg                                        <  1:1305819/91‑1 (MQ=255)

                                                      gTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGta                                      >  1:3794595/1‑91 (MQ=255)

                                                       tCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGtat                                     >  1:3587239/1‑91 (MQ=255)

                                                       tCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGtat                                     >  1:377070/1‑91 (MQ=255)

                                                       tCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCCGTCGCTTTTGtat                                     >  1:4141360/1‑91 (MQ=255)

                                                       tCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCAGTCGCTTTTGtat                                     >  1:4142403/1‑91 (MQ=255)

                                                        cTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGtata                                    <  1:3384495/91‑1 (MQ=255)

                                                          tGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCGTTTTGAATTTTATCTGTCGCTTTTGTATAAg                                  >  1:3030718/1‑91 (MQ=255)

                                                           gTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGc                                 <  1:2352931/91‑1 (MQ=255)

                                                           gTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGc                                 <  1:2353079/91‑1 (MQ=255)

                                                            tCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCt                                <  1:1239028/91‑1 (MQ=255)

                                                               TACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGa                             >  1:1719791‑M1/1‑91 (MQ=255)

                                                                aCAAAGTCAACATGATCCCAATCATGTtttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagctttttggcatc                            <  1:4003615‑M2/91‑65 (MQ=255)

                                                                aCAAAGTCAACATGATCCCAATCATGTtttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggcatc                            <  1:4002961‑M2/91‑65 (MQ=255)

                                                                ACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTTACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGAt                            <  1:3611030‑M1/91‑1 (MQ=255)

                                                                ACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGAt                            >  1:210874‑M1/1‑91 (MQ=255)

                                                                 cAAAGTCAACATGATCCCAATCATGTtttgtaggacaagacagttcggatacagtgcgcacaagagaagaattacaagatttttggcatca                           <  1:3293868‑M2/91‑66 (MQ=255)

                                                                     gTCAACATGATCCCAATCATGTtttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggcatcattta                       <  1:1415176‑M2/91‑70 (MQ=255)

                                                                     gTCAACATGATCCCAATCATGTtttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggcatcattta                       <  1:76707‑M2/91‑70 (MQ=255)

                                                                     gTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAAt                       <  1:2377853/91‑1 (MQ=255)

                                                                     gTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAAt                       >  1:3247121/1‑91 (MQ=255)

                                                                      tCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATg                      >  1:3462383/1‑91 (MQ=255)

                                                                       cAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATgg                     >  1:1994118/1‑91 (MQ=255)

                                                                       cAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATgg                     >  1:510098/1‑91 (MQ=255)

                                                                       cAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATgg                     >  1:1766739/1‑91 (MQ=255)

                                                                       cAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATgg                     >  1:3115243/1‑91 (MQ=255)

                                                                       cAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATgg                     >  1:3115226/1‑91 (MQ=255)

                                                                        aaCATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGa                    >  1:2177412/1‑91 (MQ=255)

                                                                        aaCATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGa                    >  1:3405144/1‑91 (MQ=255)

                                                                        aaCATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGa                    >  1:3212723/1‑91 (MQ=255)

                                                                        aaCATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGa                    >  1:3212456/1‑91 (MQ=255)

                                                                         aCATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGAt                   >  1:1189961/1‑91 (MQ=255)

                                                                          cATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATg                  >  1:1207999/1‑91 (MQ=255)

                                                                              aTCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTga              >  1:2394679/1‑91 (MQ=255)

                                                                               tCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTgag             >  1:937036/1‑91 (MQ=255)

                                                                               tCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTgag             >  1:96171/1‑91 (MQ=255)

                                                                                 ccAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGagaa           <  1:3281374/91‑1 (MQ=255)

                                                                                   aaTCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGagaaga         <  1:1945742/91‑1 (MQ=255)

                                                                                   aaTCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGagaaga         <  1:1945775/91‑1 (MQ=255)

                                                                                   aaTCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGagaaga         <  1:2701113/91‑1 (MQ=255)

                                                                                    aTCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAgaagaa        >  1:1507334/1‑91 (MQ=255)

                                                                                    aTCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAgaagaa        >  1:1507280/1‑91 (MQ=255)

                                                                                    aTCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAgaagaa        <  1:2383804/91‑1 (MQ=255)

                                                                                    aTCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAgaagaa        <  1:2384202/91‑1 (MQ=255)

                                                                                     tCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAGAAGaaa       <  1:3886652/91‑1 (MQ=255)

                                                                                     tCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAGAAGaaa       >  1:44674/1‑91 (MQ=255)

                                                                                     tCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAGAAGaaa       >  1:45304/1‑91 (MQ=255)

                                                                                       aTGTTCTGTAGGCGTCACTTGCCAATTGCCTTTTTGAATTTTATCTGTCGCTTATGTATAAGCTTGATTAAATGGATGTTGAGAAGAAATa     <  1:3865038/91‑1 (MQ=255)

                                                                                          ttttGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAGAAGAAATAACg  >  1:1562645/1‑91 (MQ=255)

                                                                                          ttttGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAGAAGAAATAACg  <  1:3657435/91‑1 (MQ=255)

TAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAGAAGAAATAACG  >  USA300TCH1516_ALE/2830670‑2830850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.