BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2830738	95 (0.970)	6 (0.070)	4/144	NT	6.0%	coding (1927/2046 nt)	lipA_2	Lipase 1
*	?	USA300TCH1516_ALE	= 2830760	101 (1.140)	6 (0.070)	4/144	NT	6.0%	coding (1905/2046 nt)	lipA_2	Lipase 1

Only 100 of 153 total aligned reads displayed.

CAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAA  >  USA300TCH1516_ALE/2830648‑2830828

cAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTATATCAGAACTGTCTTGTCCTACAAA                                                                                            >  1:1617960‑M1/1‑91 (MQ=255)

  gTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGt                                                                                          >  1:885020/1‑91 (MQ=255)

    tttCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCa                                                                                        >  1:2462025/1‑91 (MQ=255)

              tCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGAttgg                                                                              <  1:2109647/91‑4 (MQ=255)

              tCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGAttgg                                                                              <  1:1789797/91‑4 (MQ=255)

              tCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGAttgg                                                                              <  1:720739/91‑4 (MQ=255)

               cGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGAttggg                                                                             <  1:367134/91‑5 (MQ=255)

               cGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGAttggg                                                                             <  1:367149/91‑5 (MQ=255)

               cGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGAttggg                                                                             <  1:1116116/91‑5 (MQ=255)

                gTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCaa                                                                            <  1:3961457/91‑1 (MQ=255)

                gTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCaa                                                                            <  1:3428684/91‑1 (MQ=255)

                  cTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATc                                                                          <  1:3108875/91‑1 (MQ=255)

                  cTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATc                                                                          <  1:2843441/91‑1 (MQ=255)

                   tGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCa                                                                         >  1:4052740/1‑91 (MQ=255)

                   tGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCa                                                                         <  1:1608094/91‑1 (MQ=255)

                    gCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCAt                                                                        <  1:2571301/91‑1 (MQ=255)

                      tAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAacatgattgggatcatgttgac                                                                      <  1:76707‑M1/91‑23 (MQ=255)

                      tAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGt                                                                      <  1:263465/91‑1 (MQ=255)

                       aaaTGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAacatgattgggatcatgttgact                                                                     <  1:1623208‑M1/91‑24 (MQ=255)

                         taatcaagcttatacaaaagcgacagataaaattcaaaaaggcatttggcaagtgacgCCTACAAAGTCAACATGATCCCAATCATGtttt                                                                   >  1:1231723‑M1/59‑91 (MQ=255)

                          tgatgCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCCGAACTGTCTTGTCCTACAAAacatgattgggatcatgttgactttg                                                                  <  1:3293868‑M1/91‑27 (MQ=255)

                          tgatgCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttg                                                                  <  1:1286194‑M2/91‑5 (MQ=255)

                          tgatgCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttg                                                                  <  1:1286241‑M2/91‑5 (MQ=255)

                          aatcaagcttatacaaaagcgacagataaaattcaaaaaggcatttggcaagtgacgCCTACAAAGTCAACATGATCCCAATCATGTTTTg                                                                  >  1:1253724‑M1/58‑91 (MQ=255)

                           gatgCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAacatgattgggatcatgttgactttgt                                                                 <  1:4002961‑M1/91‑28 (MQ=255)

                           gatgCCAAAAAGCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAacatgattgggatcatgttgactttgt                                                                 <  1:4003615‑M1/91‑28 (MQ=255)

                           atcaagcttatacaaaagcgacagataaaattcaaaaaggcatttggcaagtgacgCCTACAAAGTCAACATGATCCCAATCATGTTTTGt                                                                 >  1:1085854‑M1/57‑91 (MQ=255)

                            tcaagcttatacaaaagcgacagataaaattcaaaaaggcatttggcaagtgacgCCTACAAAGTCAACATGATCCCAATCATGTTTTGTa                                                                >  1:2148390‑M1/56‑91 (MQ=255)

                            atgCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgta                                                                <  1:3907788‑M2/91‑7 (MQ=255)

                            atgCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgta                                                                <  1:3850551‑M2/91‑7 (MQ=255)

                             tgCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgtag                                                               >  1:3219180‑M2/1‑84 (MQ=255)

                             tgCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgtag                                                               <  1:3612868‑M2/91‑8 (MQ=255)

                              gCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgtagg                                                              <  1:660176‑M2/91‑9 (MQ=255)

                              gCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgtagg                                                              <  1:2763895‑M2/91‑9 (MQ=255)

                              gCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgtagg                                                              <  1:2031073‑M2/91‑9 (MQ=255)

                              gCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgtagg                                                              <  1:239671‑M2/91‑9 (MQ=255)

                              gCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgtagg                                                              <  1:239306‑M2/91‑9 (MQ=255)

                               ccAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGc                                                             <  1:3044833/91‑1 (MQ=255)

                               ccAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGc                                                             <  1:2529621/91‑1 (MQ=255)

                                cAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCg                                                            <  1:1227993/91‑1 (MQ=255)

                                cAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCg                                                            <  1:2887725/91‑1 (MQ=255)

                                cAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCg                                                            <  1:2887448/91‑1 (MQ=255)

                                 aaaaaTCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGt                                                           >  1:2673720/1‑91 (MQ=255)

                                         tGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGcc                                                   >  1:2303422/1‑91 (MQ=255)

                                          gTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCa                                                  >  1:1854945/1‑91 (MQ=255)

                                           tAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCaa                                                 >  1:1402476/1‑91 (MQ=255)

                                            aaTTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACGTGATCCCAATCATGTTTTGTAGGCGTCACTTGCCaaa                                                <  1:3499545/91‑1 (MQ=255)

                                            aaTTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCaaa                                                <  1:278240/91‑1 (MQ=255)

                                            aaTTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCaaa                                                <  1:3738956/91‑1 (MQ=255)

                                            aaTTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGAGCCCAATCATGTTTTGTAGGCGTCACTTGCCaaa                                                <  1:3120928/91‑1 (MQ=255)

                                             aTTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAAt                                               <  1:1924843/91‑1 (MQ=255)

                                                cttctCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGcc                                            <  1:108546/91‑1 (MQ=255)

                                                   ctctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCttt                                         >  1:1164302/1‑91 (MQ=255)

                                                   ctctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCttt                                         <  1:3934570/91‑1 (MQ=255)

                                                    tctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCtttt                                        <  1:2300663/91‑1 (MQ=255)

                                                    tctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCtttt                                        <  1:659095/91‑1 (MQ=255)

                                                    tctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCtttt                                        <  1:676964/91‑1 (MQ=255)

                                                     ctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCttttt                                       <  1:557074/91‑1 (MQ=255)

                                                     ctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCttttt                                       >  1:3540241/1‑91 (MQ=255)

                                                       tgtgCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGa                                     >  1:509496/1‑91 (MQ=255)

                                                        gtgCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGaa                                    >  1:1492714/1‑91 (MQ=255)

                                                             cACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTa                               >  1:1897735/1‑91 (MQ=255)

                                                                tGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCt                            <  1:3602230/91‑1 (MQ=255)

                                                                 gTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTg                           <  1:4062759/91‑1 (MQ=255)

                                                                    tCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCg                        >  1:3441536/1‑91 (MQ=255)

                                                                      aGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCt                      <  1:1408643/91‑1 (MQ=255)

                                                                       gAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCtt                     >  1:1672475/1‑91 (MQ=255)

                                                                       gAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCtt                     >  1:1044335/1‑91 (MQ=255)

                                                                        aaCTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCttt                    <  1:1055229/91‑1 (MQ=255)

                                                                        aaCTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCttt                    >  1:3426397/1‑91 (MQ=255)

                                                                         aCTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCtttt                   <  1:2994560/91‑1 (MQ=255)

                                                                         aCTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCtttt                   <  1:2995047/91‑1 (MQ=255)

                                                                          cTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTg                  <  1:1305819/91‑1 (MQ=255)

                                                                           tGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGt                 >  1:3272233/1‑91 (MQ=255)

                                                                           tGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGt                 >  1:3786611/1‑91 (MQ=255)

                                                                            gTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGta                >  1:3794595/1‑91 (MQ=255)

                                                                            gTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGta                >  1:635808/1‑91 (MQ=255)

                                                                             tCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGtat               >  1:3587239/1‑91 (MQ=255)

                                                                             tCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGtat               >  1:377070/1‑91 (MQ=255)

                                                                             tCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCCGTCGCTTTTGtat               >  1:4141360/1‑91 (MQ=255)

                                                                             tCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCAGTCGCTTTTGtat               >  1:4142403/1‑91 (MQ=255)

                                                                              cTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGtata              <  1:3324752/91‑1 (MQ=255)

                                                                              cTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGtata              <  1:3384495/91‑1 (MQ=255)

                                                                                tGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCGTTTTGAATTTTATCTGTCGCTTTTGTATAAg            >  1:3030718/1‑91 (MQ=255)

                                                                                 gTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGc           <  1:2353079/91‑1 (MQ=255)

                                                                                  tCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCt          <  1:1239028/91‑1 (MQ=255)

                                                                                   ccTACAAAacatgattgggatcatgttgactttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggc         <  1:239306‑M1/91‑84 (MQ=255)

                                                                                   ccTACAAAacatgattgggatcatgttgactttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggc         <  1:2031073‑M1/91‑84 (MQ=255)

                                                                                   ccTACAAAacatgattgggatcatgttgactttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggc         <  1:2928842‑M1/91‑84 (MQ=255)

                                                                                   ccTACAAAacatgattgggatcatgttgactttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggc         <  1:239671‑M1/91‑84 (MQ=255)

                                                                                   ccTACAAAacatgattgggatcatgttgactttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggc         >  1:2465828‑M1/1‑8 (MQ=255)

                                                                                   ccTACAAAacatgattgggatcatgttgactttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggc         <  1:2763895‑M1/91‑84 (MQ=255)

                                                                                    cTACAAAacatgattgggatcatgttgactttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggca        >  1:3879053‑M1/1‑7 (MQ=255)

                                                                                    cTACAAAacatgattgggatcatgttgactttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggca        <  1:3612868‑M1/91‑85 (MQ=255)

                                                                                     tACAAAacatgattgggatcatgttgactttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggcat       <  1:3907788‑M1/91‑86 (MQ=255)

                                                                                     TACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGa       >  1:1719791‑M1/1‑91 (MQ=255)

                                                                                      aCAAAGTCAACATGATCCCAATCATGTtttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagctttttggcatc      <  1:4003615‑M2/91‑65 (MQ=255)

                                                                                       cAAAacatgattgggatcatgttgactttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggcatca     >  1:3270566‑M1/1‑4 (MQ=255)

                                                                                       cAAAacatgattgggatcatgttgactttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggcatca     <  1:1286194‑M1/91‑88 (MQ=255)

                                                                                          aGTCAACATGATCCCAATCATGTtttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggcatcattt  <  1:1623208‑M2/91‑69 (MQ=255)

CAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAA  >  USA300TCH1516_ALE/2830648‑2830828

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.