| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2833267 = | 81 (0.820) | 8 (0.090) | 5/148 | NT | 9.5% | intergenic (‑603/+487) | lipA_2/hisI | Lipase 1/Phosphoribosyl‑AMP cyclohydrolase |
| ? | USA300TCH1516_ALE | 2833307 = | 78 (0.860) | intergenic (‑643/+447) | lipA_2/hisI | Lipase 1/Phosphoribosyl‑AMP cyclohydrolase | |||||
GAAATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2833362‑2833267‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggatgCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAATAC > USA300TCH1516_ALE/2833307‑2833396 GAAATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATG > 1:628355/1‑91 AAATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGG > 1:2123296/1‑91 AAATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGG > 1:1100435/1‑91 AAATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGG > 1:1095792/1‑91 AATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGG > 1:3669210/1‑91 AATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGG < 1:3238334/91‑1 AATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGG < 1:3238349/91‑1 ATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGA > 1:1662996/1‑91 AGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGATG < 1:718523/91‑1 AGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGATG > 1:2003355/1‑91 AGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGATG > 1:2003374/1‑91 GCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGATGTATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTC > 1:3329149/1‑91 GCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTC > 1:2027516/1‑91 CGAAAGTTAGACTAAAAAACTAACTTTATGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTC > 1:552963/1‑91 CGAAAGTTAGACTAAAAAACTAACTTTATGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTC > 1:2828556/1‑91 GAAAGTTAGACTAAAAAACTAACTTTATGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCA > 1:1113919/1‑91 GAAAGTTAGACTAAAAAACTAACTTTATGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCA > 1:1114078/1‑91 AAAGTTAGACTAAAAAACTAACTTTATGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAG > 1:240880/1‑91 AGTTAGACTAAAAAACTAACTTTATGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGC > 1:1023542/1‑91 GGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAA > 1:3680529/1‑91 GGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAA < 1:4120878/91‑1 GGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAA < 1:4121938/91‑1 GGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAA > 1:413113/1‑91 GATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATACTATAAA < 1:1601141/91‑1 GATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATACTATAAA < 1:1601057/91‑1 ATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAAT < 1:1079872/91‑1 ATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATACTATAAAT < 1:685773/91‑1 GCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAATAC > 1:1297589/1‑91 GCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAATAC > 1:730576/1‑91 GAAATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2833362‑2833267‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggatgCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAATAC > USA300TCH1516_ALE/2833307‑2833396 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |