BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2833267 =	81 (0.820)	8 (0.090)	5/148	NT	9.5%	intergenic (‑603/+487)	lipA_2/hisI	Lipase 1/Phosphoribosyl‑AMP cyclohydrolase
*	?	USA300TCH1516_ALE	2833307 =	78 (0.860)	8 (0.090)	5/148	NT	9.5%	intergenic (‑643/+447)	lipA_2/hisI	Lipase 1/Phosphoribosyl‑AMP cyclohydrolase

Only 100 of 122 total aligned reads displayed.

TGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAATACA  >  USA300TCH1516_ALE/2833217‑2833397

tGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGc                                                                                            <  1:3020447/91‑1 (MQ=255)

tGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGc                                                                                            >  1:1628014/1‑91 (MQ=255)

gaaatgtcatagcctatttaaaagacaatctccattagaactaagatatgCATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGc                                                                                            >  1:2027516‑M1/51‑91 (MQ=255)

gaaatgtcatagcctatttaaaagacaatctccattagaactaagatataCATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGc                                                                                            >  1:3329149‑M1/51‑91 (MQ=255)

  aaCTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCat                                                                                          <  1:908880/91‑1 (MQ=255)

  aaCTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCat                                                                                          <  1:3884355/91‑1 (MQ=255)

      aCCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCt                                                                                      <  1:1748649/91‑1 (MQ=255)

       ccTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCtt                                                                                     <  1:395901/91‑1 (MQ=255)

        cTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTa                                                                                    >  1:3348235/1‑91 (MQ=255)

          ttAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGt                                                                                  >  1:494054/1‑91 (MQ=255)

           tAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGtt                                                                                 >  1:663955/1‑91 (MQ=255)

             aCTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCt                                                                               >  1:3380763/1‑91 (MQ=255)

                  aTCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATgg                                                                          <  1:978493/91‑1 (MQ=255)

                  aTCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATgg                                                                          >  1:2505015/1‑91 (MQ=255)

                  aTCTCGAATGTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATgg                                                                          <  1:3965426/91‑1 (MQ=255)

                   tctcGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGga                                                                         <  1:2615155/91‑1 (MQ=255)

                    ctcGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGgag                                                                        >  1:1772838/1‑91 (MQ=255)

                      cGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGAt                                                                      >  1:964481/1‑91 (MQ=255)

                       gAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGAtt                                                                     >  1:147557/1‑91 (MQ=255)

                        aaTTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTg                                                                    <  1:283918/91‑1 (MQ=255)

                             atgatgATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCttt                                                               >  1:1526108/1‑91 (MQ=255)

                             atgatgATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCttt                                                               >  1:1526248/1‑91 (MQ=255)

                              tgatgaTTAGCATGAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCtttt                                                              <  1:4152366/91‑1 (MQ=255)

                              tgatgaTTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCtttt                                                              >  1:3291043/1‑91 (MQ=255)

                                  gatTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAAt                                                          <  1:2563094/91‑1 (MQ=255)

                                   atTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATa                                                         <  1:843053/91‑1 (MQ=255)

                                     tAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAgg                                                       <  1:2906831/91‑1 (MQ=255)

                                     tAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAgg                                                       <  1:2461749/91‑1 (MQ=255)

                                     tAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAgg                                                       <  1:1205194/91‑1 (MQ=255)

                                       gCATAAATATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCt                                                     <  1:2080598/91‑1 (MQ=255)

                                       gCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCt                                                     >  1:674924/1‑91 (MQ=255)

                                       gCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCt                                                     <  1:1020034/91‑1 (MQ=255)

                                       gCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCt                                                     <  1:2377054/91‑1 (MQ=255)

                                       gCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCt                                                     <  1:21828/91‑1 (MQ=255)

                                       gCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCt                                                     <  1:232050/91‑1 (MQ=255)

                                        cATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTa                                                    >  1:914461/1‑91 (MQ=255)

                                        cATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTa                                                    >  1:438926/1‑91 (MQ=255)

                                         aTAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTAt                                                   <  1:2864929/91‑1 (MQ=255)

                                          tAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATg                                                  <  1:2370998/91‑1 (MQ=255)

                                              aaTACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACAt                                              <  1:1003369/91‑1 (MQ=255)

                                                tACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACAttt                                            <  1:3585826/91‑1 (MQ=255)

                                                tACATCCCATAAAGTTAGTGTTTTAGTCGAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACAttt                                            <  1:335316/91‑1 (MQ=255)

                                                 gcatcccgaaagttagactaaaaaactaactttatgggatgTATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTc                                           >  1:3329149‑M2/42‑91 (MQ=255)

                                                 gcatcccgaaagttagactaaaaaactaactttatgggatgCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTc                                           >  1:2027516‑M2/42‑91 (MQ=255)

                                                 aCATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTc                                           <  1:1592171/91‑1 (MQ=255)

                                                 aCATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTc                                           <  1:1926477/91‑1 (MQ=255)

                                                 aCATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTc                                           <  1:1926340/91‑1 (MQ=255)

                                                  CATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCt                                          >  1:2003374‑M1/1‑91 (MQ=255)

                                                    TCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTAt                                        >  1:1662996‑M1/1‑91 (MQ=255)

                                                     CCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTAtt                                       >  1:3669210‑M1/1‑91 (MQ=255)

                                                     CCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTAtt                                       <  1:3238349‑M1/91‑1 (MQ=255)

                                                     CCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTAtt                                       <  1:3238334‑M1/91‑1 (MQ=255)

                                                      CCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTAttt                                      >  1:1100435‑M1/1‑91 (MQ=255)

                                                      CCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTAttt                                      >  1:2123296‑M1/1‑91 (MQ=255)

                                                      CCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTAttt                                      >  1:1095792‑M1/1‑91 (MQ=255)

                                                       cgaaagttagactaaaaaactaactttatgggatgCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTc                                     >  1:552963‑M2/36‑91 (MQ=255)

                                                       cgaaagttagactaaaaaactaactttatgggatgCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTc                                     >  1:2828556‑M2/36‑91 (MQ=255)

                                                       CATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTc                                     >  1:628355‑M1/1‑91 (MQ=255)

                                                        gaaagttagactaaaaaactaactttatgggatgCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCa                                    >  1:1114078‑M2/35‑91 (MQ=255)

                                                        gaaagttagactaaaaaactaactttatgggatgCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCa                                    >  1:1113919‑M2/35‑91 (MQ=255)

                                                         aaagttagactaaaaaactaactttatgggatgCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAg                                   >  1:240880‑M2/34‑91 (MQ=255)

                                                           agttagactaaaaaactaactttatgggatgCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGc                                 >  1:1023542‑M2/32‑91 (MQ=255)

                                                            agttagttTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCt                                <  1:1802181/91‑1 (MQ=255)

                                                            agttagttTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCt                                <  1:866986/91‑1 (MQ=255)

                                                            agttagttTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCt                                <  1:870906/91‑1 (MQ=255)

                                                                agttTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGat                            <  1:3427866/91‑1 (MQ=255)

                                                                agttTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGat                            >  1:1346215/1‑91 (MQ=255)

                                                                 gttTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGata                           <  1:278363/91‑1 (MQ=255)

                                                                 gttTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGata                           >  1:1048409/1‑91 (MQ=255)

                                                                 gttTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGata                           >  1:2854087/1‑91 (MQ=255)

                                                                 gttTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGata                           >  1:1879815/1‑91 (MQ=255)

                                                                 gttTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGata                           <  1:3318894/91‑1 (MQ=255)

                                                                 gttTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGata                           <  1:3318614/91‑1 (MQ=255)

                                                                 gttTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGata                           <  1:4107488/91‑1 (MQ=255)

                                                                   tttttAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGatata                         >  1:585858/1‑91 (MQ=255)

                                                                     tttAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATAtt                       <  1:3435194/91‑1 (MQ=255)

                                                                     tttAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATAtt                       >  1:2313384/1‑91 (MQ=255)

                                                                       tAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTg                     >  1:1601900/1‑91 (MQ=255)

                                                                        aGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGt                    <  1:1706098/91‑1 (MQ=255)

                                                                        aGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGt                    <  1:1705442/91‑1 (MQ=255)

                                                                           cTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTAtt                 >  1:2432799/1‑91 (MQ=255)

                                                                           cTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTAtt                 >  1:1955760/1‑91 (MQ=255)

                                                                           cTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTAtt                 >  1:1001895/1‑91 (MQ=255)

                                                                            tAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTAttt                <  1:2128225/91‑1 (MQ=255)

                                                                              aCTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTtat              <  1:718764/91‑1 (MQ=255)

                                                                                   cGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGtat         >  1:3947497/1‑91 (MQ=255)

                                                                                   cGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGtat         >  1:3078703/1‑91 (MQ=255)

                                                                                   cGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATACtat         <  1:1193652/91‑1 (MQ=255)

                                                                                   cGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATACtat         <  1:694153/91‑1 (MQ=255)

                                                                                   cGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATACtat         <  1:1603164/91‑1 (MQ=255)

                                                                                     ggatgCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATaa       >  1:413113‑M2/6‑91 (MQ=255)

                                                                                     ggatgCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATaa       <  1:4121938‑M2/86‑1 (MQ=255)

                                                                                     ggatgCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATaa       >  1:3680529‑M2/6‑91 (MQ=255)

                                                                                      gatgCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATACTATaaa      <  1:1601057‑M2/87‑1 (MQ=255)

                                                                                       atgCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAAt     <  1:1079872‑M2/88‑1 (MQ=255)

                                                                                       atgCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATACTATAAAt     <  1:685773‑M2/88‑1 (MQ=255)

                                                                                         gCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAATAc   >  1:1297589‑M2/2‑91 (MQ=255)

                                                                                         gCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAATAc   >  1:730576‑M2/2‑91 (MQ=255)

                                                                                          cATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAATACa  <  1:556130/91‑1 (MQ=255)

                                                                                          cATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAATACa  <  1:3653189/91‑1 (MQ=255)

TGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAATACA  >  USA300TCH1516_ALE/2833217‑2833397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.