| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2847730 = | 69 (0.700) | 21 (0.260) | 10/132 | NT | 28.8% | intergenic (+39/+110) | yceI/USA300HOU_RS14590 | Protein YceI/Lactonase drp35 |
| ? | USA300TCH1516_ALE | 2847769 = | 47 (0.580) | intergenic (+78/+71) | yceI/USA300HOU_RS14590 | Protein YceI/Lactonase drp35 | |||||
CCTGAATGAAAGGCGTCTAAAATTAGGGTGAACAGTTAGTGCTTGTTACACATGAGTTAAACGAAAAATGCCAACTATACCTAGGGATGATATAGTTGGCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2847833‑2847730‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTT > USA300TCH1516_ALE/2847769‑2847858 CCTGAATGAAAGGCGTCTAAAATTAGGGTGAACAGTTAGTGCTTGTTACACATGAGTTAAACGAAAAATGCCAACTATACCTAGGGATGAT > 1:3503514/1‑91 TGAAAGGCGTCTAAAATTAGGGTGAACAGTTAGTGCTTGTTACACATGAGTTAAACGAAAAATGCCAACTATACCTAGGGATGATATAGTT > 1:2992327/1‑91 GAAAGGCGTCTAAAATTAGGGTGAACAGTTAGTGCTTGTTACACATGAGTTAAACGAAAAATGCCAACTATACCTAGGGATGATATAGTTG > 1:33331/1‑91 AAGGCGTCTAAAATTAGGGTGAACAGTTAGTGCTTGTTACACATGAGTTAAACGAAAAATGCCAACTATACCTAGGGATGATATAGTTGGC < 1:1589814/91‑1 AGGCGTCTAAAATTAGGGTGAACAGTTAGTGCTTGTTACACATGAGTTAAACGAAAAATGCCAACTATACCTAGGGATGATATAGTTGGCA > 1:3818461/1‑91 AGGCGTCTAAAATTAGGGTGAACAGTTAGTGCTTGTTACACATGAGTTAAACGAAAAATGCCAACTATACCTAGGGATGATATAGTTGGCA > 1:3906532/1‑91 GCGTCTAAAATTAGGGTGAACAGTTAGTGCTTGTTACACATGAGTTAAACGAAAAATGCCAACTATACCTAGGGATGATATAGTTGGCATT > 1:2136638/1‑91 AGTGCTTGTTACACATGAGTTAAACGAAAAATGCCAACTATACCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAG > 1:557166/1‑91 CATGAGTTAAACGAAAAATGCCAACTATACCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA > 1:2315046/1‑91 CATGAGTTAAACGAAAAATGCCAACTATACCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCA > 1:2315582/1‑91 GCCAACTATACCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCCTGTGTAACAAGCACTAACTGTTCACCCTAGTTTTAGACGCCTT > 1:4150904/1‑91 CCAACTATACCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTT > 1:1632089/1‑91 AACTATACCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCA > 1:1867103/1‑91 ACTATACCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCAT > 1:3158939/1‑91 ATACCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCA > 1:3922303/1‑91 ATACCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCA > 1:3520208/1‑91 TACCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAG > 1:2725431/1‑91 TACCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAG > 1:3686516/1‑91 TACCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAG > 1:1904525/1‑91 ACCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGG > 1:2964916/1‑91 ACCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGG > 1:1537761/1‑91 ACCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGG > 1:996935/1‑91 CCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGT > 1:3504984/1‑91 CCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGT > 1:3504854/1‑91 CCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGT > 1:3143839/1‑91 CCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGT > 1:3255646/1‑91 CCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGT > 1:3143533/1‑91 CCTAGGGATGATATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGT > 1:2342178/1‑91 gtATGATATAGTTGGCATTTTTCGTTTAACACATGTGTAACAAGCACTAACTGTTCACCCTAATTTTGGACGCCTTTCATTCAGGTAGGTC < 1:84480/89‑1 AGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAA > 1:188845/1‑91 TTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACT < 1:36250/91‑1 TTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACT > 1:2006662/1‑91 TGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTG < 1:1629719/91‑1 GGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGA < 1:733942/91‑1 GGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGA < 1:1948746/91‑1 GCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAA < 1:1088269/91‑1 GCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAA < 1:1211566/91‑1 GCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAA < 1:3726854/91‑1 GCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAA > 1:1030811/1‑91 TTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACT < 1:500262/91‑1 TTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACT < 1:3930218/91‑1 TTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTT < 1:2736192/91‑1 CCTGAATGAAAGGCGTCTAAAATTAGGGTGAACAGTTAGTGCTTGTTACACATGAGTTAAACGAAAAATGCCAACTATACCTAGGGATGATATAGTTGGCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2847833‑2847730‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTT > USA300TCH1516_ALE/2847769‑2847858 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |