New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2847730 =69 (0.700)21 (0.260) 10/132 NT 28.8% intergenic (+39/+110) yceI/USA300HOU_RS14590 Protein YceI/Lactonase drp35
?USA300TCH1516_ALE 2847769 = 47 (0.580)intergenic (+78/+71) yceI/USA300HOU_RS14590 Protein YceI/Lactonase drp35

CTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTTT  >  USA300TCH1516_ALE/2847682‑2847859
                                                                                       |                                                                                          
ctcAGAATAATCTCATTACACAATCCTCATTGTATTAATATATATACGAAATGCCAACTGTATCATCCCTAGGTATAGTTGGCATTTTTCg                                                                                         <  1:3685297/91‑1 (MQ=255)
  cAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGtt                                                                                       <  1:2025052/91‑1 (MQ=255)
   aGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGttt                                                                                      <  1:342546/91‑1 (MQ=255)
     aataatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTaa                                                                                    <  1:4110361/91‑1 (MQ=255)
     aataatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTaa                                                                                    <  1:2433413/91‑1 (MQ=255)
     aataatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTaa                                                                                    <  1:2431445/91‑1 (MQ=255)
      ataatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAAc                                                                                   >  1:3722036/1‑91 (MQ=255)
      ataatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAAc                                                                                   >  1:2451446/1‑91 (MQ=255)
       taatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACt                                                                                  <  1:522534/91‑1 (MQ=255)
        aatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTc                                                                                 <  1:707093/91‑1 (MQ=255)
           tgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtg                                                                              >  1:2315046‑M1/38‑91 (MQ=255)
           tgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtg                                                                              >  1:2315582‑M1/38‑91 (MQ=255)
           ctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtg                                                                              <  1:636013/91‑1 (MQ=255)
           ctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtg                                                                              <  1:565987/91‑1 (MQ=255)
            tcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtgt                                                                             <  1:1550190/91‑1 (MQ=255)
            tcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtgt                                                                             >  1:874680/1‑91 (MQ=255)
              aTTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATgtgt                                                                           >  1:3790438/1‑91 (MQ=255)
              aTTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATgtgt                                                                           >  1:516032/1‑91 (MQ=255)
              aTTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATgtgt                                                                           >  1:3757956/1‑91 (MQ=255)
               ttACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTa                                                                          <  1:2414884/91‑1 (MQ=255)
                   acaATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACaa                                                                      >  1:535167/1‑91 (MQ=255)
                    caATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAg                                                                     >  1:3130104/1‑91 (MQ=255)
                    agtgcttgttacacatgagttaaacgaaaaatgccaactatacctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAg                                                                     >  1:557166‑M2/68‑91 (MQ=255)
                      aTCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCa                                                                   <  1:3096570/91‑1 (MQ=255)
                        cttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACt                                                                 >  1:557166‑M1/25‑91 (MQ=255)
                        ccTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATATTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACt                                                                 <  1:3494004/91‑1 (MQ=255)
                        ccTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACt                                                                 <  1:2898702/91‑1 (MQ=255)
                             ttGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTg                                                            >  1:1299309/1‑91 (MQ=255)
                              tGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGt                                                           >  1:4068817/1‑91 (MQ=255)
                              tGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGt                                                           <  1:2326162/91‑1 (MQ=255)
                               gTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGtt                                                          <  1:536690/91‑1 (MQ=255)
                                 tttAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCa                                                        <  1:3364991/91‑1 (MQ=255)
                                 catgagttaaacgaaaaatgccaactatacctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCa                                                        >  1:2315046‑M2/55‑91 (MQ=255)
                                 catgagttaaacgaaaaatgccaactatacctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCa                                                        >  1:2315582‑M2/55‑91 (MQ=255)
                                    aaTATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAccc                                                     <  1:347247/91‑1 (MQ=255)
                                    aaTATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAccc                                                     <  1:530018/91‑1 (MQ=255)
                                    aaTATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAccc                                                     <  1:530401/91‑1 (MQ=255)
                                     atatatatACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCt                                                    <  1:519581/91‑1 (MQ=255)
                                      tatatataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTa                                                   >  1:115896/1‑91 (MQ=255)
                                          tataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAAttt                                               <  1:1766874/91‑1 (MQ=255)
                                           ataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAAtttt                                              >  1:3370745/1‑91 (MQ=255)
                                           ataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAAtttt                                              <  1:114358/91‑1 (MQ=255)
                                           ataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAAtttt                                              >  1:210262/1‑91 (MQ=255)
                                           ataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAAtttt                                              <  1:114062/91‑1 (MQ=255)
                                             aCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAg                                            <  1:3430446/91‑1 (MQ=255)
                                             aCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAg                                            >  1:2163781/1‑91 (MQ=255)
                                               gAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGAc                                          <  1:3077103/91‑1 (MQ=255)
                                                 AATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGc                                        >  1:2136638‑M1/1‑91 (MQ=255)
                                                   TGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCt                                      >  1:3818461‑M1/1‑91 (MQ=255)
                                                   TGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCt                                      >  1:3906532‑M1/1‑91 (MQ=255)
                                                    gccaactatacctagggatgatatagttggcatttTTCGTTTAACTCCTGTGTAACAAGCACTAACTGTTCACCCTAGTTTTAGACGCCtt                                     >  1:4150904‑M2/36‑91 (MQ=255)
                                                    GCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCtt                                     <  1:1589814‑M1/91‑1 (MQ=255)
                                                     ccaactatacctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCttt                                    >  1:1632089‑M2/35‑91 (MQ=255)
                                                      CAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttc                                   >  1:33331‑M1/1‑91 (MQ=255)
                                                       aactatacctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttca                                  >  1:1867103‑M2/33‑91 (MQ=255)
                                                       AACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttca                                  >  1:2992327‑M1/1‑91 (MQ=255)
                                                        actatacctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttcat                                 >  1:3158939‑M2/32‑91 (MQ=255)
                                                           atacctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttcattca                              >  1:3520208‑M2/29‑91 (MQ=255)
                                                           atacctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttcattca                              >  1:3922303‑M2/29‑91 (MQ=255)
                                                            tacctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCag                             >  1:3686516‑M2/28‑91 (MQ=255)
                                                            tacctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCag                             >  1:2725431‑M2/28‑91 (MQ=255)
                                                            tacctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCag                             >  1:1904525‑M2/28‑91 (MQ=255)
                                                             acctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCagg                            >  1:2964916‑M2/27‑91 (MQ=255)
                                                             acctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCagg                            >  1:1537761‑M2/27‑91 (MQ=255)
                                                             acctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCagg                            >  1:996935‑M2/27‑91 (MQ=255)
                                                             ATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAgg                            >  1:3503514‑M1/1‑91 (MQ=255)
                                                              tcatcCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggt                           >  1:3952381/1‑91 (MQ=255)
                                                              tcatcCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggt                           >  1:3976629/1‑91 (MQ=255)
                                                              tcatcCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggt                           <  1:604269/91‑1 (MQ=255)
                                                              cctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggt                           >  1:3255646‑M2/26‑91 (MQ=255)
                                                              cctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggt                           >  1:3504984‑M2/26‑91 (MQ=255)
                                                              cctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggt                           >  1:3504854‑M2/26‑91 (MQ=255)
                                                              cctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggt                           >  1:2342178‑M2/26‑91 (MQ=255)
                                                              cctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggt                           >  1:3143839‑M2/26‑91 (MQ=255)
                                                              cctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggt                           >  1:3143533‑M2/26‑91 (MQ=255)
                                                                atcCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggtag                         <  1:3313020/91‑1 (MQ=255)
                                                                atcCCTAGGTATAGTCGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTAACCCTAATTTTAGACGCCTTTCATTCaggtag                         >  1:3544269/1‑91 (MQ=255)
                                                                 tcCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggtagg                        <  1:1052288/91‑1 (MQ=255)
                                                                   gtatgatatagttggcatttTTCGTTTAACACATGTGTAACAAGCACTAACTGTTCACCCTAATTTTGGACGCCTTTCATTCAGGTAGGTc                      <  1:84480‑M2/71‑1 (MQ=255)
                                                                   ccTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTc                      <  1:2231794/91‑1 (MQ=255)
                                                                     tAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCtt                    <  1:2787532/91‑1 (MQ=255)
                                                                     tAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCtt                    <  1:2789419/91‑1 (MQ=255)
                                                                       ggTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTAt                  <  1:1433648/91‑1 (MQ=255)
                                                                        gTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTAtt                 >  1:2742914/1‑91 (MQ=255)
                                                                            agttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGaaa             >  1:188845‑M2/12‑91 (MQ=255)
                                                                              ttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACt           <  1:36250‑M2/82‑1 (MQ=255)
                                                                              ttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACt           >  1:2006662‑M2/10‑91 (MQ=255)
                                                                               tggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTg          <  1:1629719‑M2/83‑1 (MQ=255)
                                                                                ggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGa         <  1:1948746‑M2/84‑1 (MQ=255)
                                                                                ggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGa         <  1:733942‑M2/84‑1 (MQ=255)
                                                                                 gcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGaa        <  1:1211566‑M2/85‑1 (MQ=255)
                                                                                 gcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGaa        <  1:3726854‑M2/85‑1 (MQ=255)
                                                                                 gcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGaa        <  1:1088269‑M2/85‑1 (MQ=255)
                                                                                 gcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGaa        >  1:1030811‑M2/7‑91 (MQ=255)
                                                                                     ttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACt    <  1:500262‑M2/89‑1 (MQ=255)
                                                                                     ttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACt    <  1:3930218‑M2/89‑1 (MQ=255)
                                                                                      tTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACtt   <  1:2736192‑M2/90‑1 (MQ=255)
                                                                                       ttCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACttt  >  1:3278009/1‑91 (MQ=255)
                                                                                       ttCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACttt  >  1:3277968/1‑91 (MQ=255)
                                                                                       |                                                                                          
CTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTTT  >  USA300TCH1516_ALE/2847682‑2847859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.