| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2847730 = | 69 (0.700) | 21 (0.260) | 10/132 | NT | 28.8% | intergenic (+39/+110) | yceI/USA300HOU_RS14590 | Protein YceI/Lactonase drp35 |
| ? | USA300TCH1516_ALE | 2847769 = | 47 (0.580) | intergenic (+78/+71) | yceI/USA300HOU_RS14590 | Protein YceI/Lactonase drp35 | |||||
Only 100 of 119 total aligned reads displayed.
TAGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGAC > USA300TCH1516_ALE/2847639‑2847819 | tAGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTG‑TTTAATATATATACGa > 1:2870406/1‑91 (MQ=255) aGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGa < 1:426722/91‑1 (MQ=255) aGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGa < 1:3360095/91‑1 (MQ=255) aGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGa < 1:2113705/91‑1 (MQ=255) ggCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGaa > 1:614117/1‑91 (MQ=255) ggCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGaa > 1:1462925/1‑91 (MQ=255) agttttcagtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaaa < 1:500262‑M1/2‑1 (MQ=255) agttttcagtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaaa < 1:3930218‑M1/2‑1 (MQ=255) gCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGaaa < 1:3123477/91‑1 (MQ=255) cAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAAt > 1:2603709/1‑91 (MQ=255) ttcagtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGc > 1:1030811‑M1/86‑91 (MQ=255) ttcagtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGc < 1:3726854‑M1/6‑1 (MQ=255) ttcagtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGc < 1:1088269‑M1/6‑1 (MQ=255) ttcagtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGc < 1:1211566‑M1/6‑1 (MQ=255) tcagtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGcc < 1:733942‑M1/7‑1 (MQ=255) tcagtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGcc < 1:1948746‑M1/7‑1 (MQ=255) aGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGcc > 1:919218/1‑91 (MQ=255) gATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCa < 1:1112940/91‑1 (MQ=255) gATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCa > 1:1457059/1‑91 (MQ=255) cagtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCa < 1:1629719‑M1/8‑1 (MQ=255) agtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCaa < 1:36250‑M1/9‑1 (MQ=255) agtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCaa > 1:2006662‑M1/83‑91 (MQ=255) gTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACt > 1:1574462/1‑91 (MQ=255) tAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACtat > 1:3132543/1‑91 (MQ=255) aaaTTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACtata > 1:4146091/1‑91 (MQ=255) aaaTTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACtata > 1:3420239/1‑91 (MQ=255) aaaTTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACtata > 1:3619210/1‑91 (MQ=255) cGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATatcatc < 1:218490/91‑1 (MQ=255) cGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATatcatc > 1:3461733/1‑91 (MQ=255) aaGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATccc < 1:1419682/91‑1 (MQ=255) aGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCt > 1:2585833/1‑91 (MQ=255) acctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAgg > 1:3143839‑M1/67‑91 (MQ=255) acctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAgg > 1:2342178‑M1/67‑91 (MQ=255) acctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAgg > 1:3504854‑M1/67‑91 (MQ=255) acctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAgg > 1:3504984‑M1/67‑91 (MQ=255) acctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAgg > 1:3255646‑M1/67‑91 (MQ=255) aTCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAgg > 1:970154/1‑91 (MQ=255) aTCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAgg < 1:2329227/91‑1 (MQ=255) aTCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAgg > 1:3026977/1‑91 (MQ=255) aTCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAgg > 1:2680812/1‑91 (MQ=255) aTCAGCTGAATTCTCAATCTCAGAATAATCTCAGTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAgg < 1:3399924/91‑1 (MQ=255) cctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGt > 1:2964916‑M1/66‑91 (MQ=255) ctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGta > 1:2725431‑M1/65‑91 (MQ=255) ctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGta > 1:1904525‑M1/65‑91 (MQ=255) ctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGta > 1:3686516‑M1/65‑91 (MQ=255) cAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGta > 1:3101534/1‑91 (MQ=255) tgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGtat > 1:3520208‑M1/64‑91 (MQ=255) aGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtat > 1:2372811/1‑91 (MQ=255) gCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtata > 1:973561/1‑91 (MQ=255) cTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAg > 1:394907/1‑91 (MQ=255) cTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAg < 1:4092511/91‑1 (MQ=255) cTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAg < 1:4092812/91‑1 (MQ=255) cTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAg > 1:2097435/1‑91 (MQ=255) cTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAg > 1:1403430/1‑91 (MQ=255) tGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGt < 1:1224091/91‑1 (MQ=255) atgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGTATAGt > 1:3158939‑M1/61‑91 (MQ=255) tgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGTATAGtt > 1:1867103‑M1/60‑91 (MQ=255) gAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGtt > 1:982467/1‑91 (MQ=255) aaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGTATAGTTgg > 1:1632089‑M1/58‑91 (MQ=255) aTTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTgg < 1:132056/91‑1 (MQ=255) aTTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTgg < 1:2584361/91‑1 (MQ=255) aaggcgtctaaaactagggtgaacagttagtgcttgttacacaggagttaaacgaaAAATGCCAACTATATCATCCCTAGGTATAGTTGGc > 1:4150904‑M1/57‑91 (MQ=255) tctcAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCa < 1:1002773/91‑1 (MQ=255) tctcAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCa > 1:2808945/1‑91 (MQ=255) tcAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCAtt > 1:1204633/1‑91 (MQ=255) atctctcAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCAttt < 1:1344997/88‑1 (MQ=255) cAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGtt < 1:2025052/91‑1 (MQ=255) aGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGttt < 1:342546/91‑1 (MQ=255) aataatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTaa < 1:2431445/91‑1 (MQ=255) ataatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAAc > 1:2451446/1‑91 (MQ=255) ataatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAAc > 1:3722036/1‑91 (MQ=255) aatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTc < 1:707093/91‑1 (MQ=255) tgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtg > 1:2315046‑M1/38‑91 (MQ=255) tgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtg > 1:2315582‑M1/38‑91 (MQ=255) ctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtg < 1:565987/91‑1 (MQ=255) ctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtg < 1:636013/91‑1 (MQ=255) tcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtgt > 1:874680/1‑91 (MQ=255) tcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtgt < 1:1550190/91‑1 (MQ=255) aTTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATgtgt > 1:3790438/1‑91 (MQ=255) aTTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATgtgt > 1:3757956/1‑91 (MQ=255) aTTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATgtgt > 1:516032/1‑91 (MQ=255) ttACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTa < 1:2414884/91‑1 (MQ=255) acaATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACaa > 1:535167/1‑91 (MQ=255) caATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAg > 1:3130104/1‑91 (MQ=255) aTCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCa < 1:3096570/91‑1 (MQ=255) cttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACt > 1:557166‑M1/25‑91 (MQ=255) ccTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACt < 1:2898702/91‑1 (MQ=255) ttGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTg > 1:1299309/1‑91 (MQ=255) tGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGt > 1:4068817/1‑91 (MQ=255) gTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGtt < 1:536690/91‑1 (MQ=255) tttAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCa < 1:3364991/91‑1 (MQ=255) aaTATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAccc < 1:530401/91‑1 (MQ=255) aaTATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAccc < 1:530018/91‑1 (MQ=255) aaTATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAccc < 1:347247/91‑1 (MQ=255) atatatatACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCt < 1:519581/91‑1 (MQ=255) tataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAAttt < 1:1766874/91‑1 (MQ=255) ataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAAtttt < 1:114062/91‑1 (MQ=255) ataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAAtttt < 1:114358/91‑1 (MQ=255) aCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAg < 1:3430446/91‑1 (MQ=255) aCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAg > 1:2163781/1‑91 (MQ=255) | TAGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGAC > USA300TCH1516_ALE/2847639‑2847819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |