| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2863074 | 116 (1.180) | 9 (0.100) | 6/150 | NT | 7.6% | intergenic (+44/+16) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2864026 | NA (NA) | intergenic (‑439/‑19) | USA300HOU_RS14670/USA300HOU_RS14675 | hypothetical protein/hypothetical protein | |||||
ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2862980‑2863074‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < USA300TCH1516_ALE/2864026‑2863937 ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC > 1:3739108/1‑91ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC > 1:3083053/1‑91ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC < 1:206059/91‑1ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCATCGAAACTACGGC > 1:4142665/1‑91 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 1:741851/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 1:1433745/91‑1 CATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTAT > 1:1099574/1‑91 ATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGA > 1:734860/1‑91 ATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGA > 1:734551/1‑91 ATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCGAATTAAGCTGGACACGTTTATCATCTTCGATG > 1:3554194/1‑91 CCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATA > 1:1773940/1‑91 TTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAAT > 1:1736459/1‑91 TTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAAT > 1:1609396/1‑91 TTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAAT > 1:1575364/1‑91 TGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATA > 1:1561836/1‑91 CTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAATTTATCATCTTCGATGAAACTCATAAATACTTC > 1:3688381/1‑91 CGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTA > 1:3960472/1‑91 CGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTA < 1:1065455/91‑1 GGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTAT > 1:1394588/1‑91 GGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTAT > 1:6972/1‑91 GCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATA < 1:217908/91‑1 CTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAA > 1:579922/1‑91 CTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAA > 1:447768/1‑91 CTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAA > 1:3667104/1‑91 CTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAA < 1:3101015/91‑1 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC > 1:3360032/1‑91 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC < 1:2843877/91‑1 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC < 1:69446/91‑1 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTACTATAAC > 1:2065369/1‑91 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTACTATAAC > 1:2065019/1‑91 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACC > 1:1890856/1‑91 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 1:4018357/1‑91 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 1:1245469/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 1:2877435/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 1:518821/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 1:1797322/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 1:821261/91‑1 ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2862980‑2863074‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < USA300TCH1516_ALE/2864026‑2863937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |