BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2863074	116 (1.180)	9 (0.100)	6/150	NT	7.6%	intergenic (+44/+16)	USA300TCH1516_02707/USA300HOU_RS14670	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2864026	NA (NA)	9 (0.100)	6/150	NT	7.6%	intergenic (‑439/‑19)	USA300HOU_RS14670/USA300HOU_RS14675	hypothetical protein/hypothetical protein

Only 100 of 158 total aligned reads displayed.

TTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT  >  USA300TCH1516_ALE/2862986‑2863164

ttCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTtct                                                                                          <  1:2290589/91‑1 (MQ=255)

ttCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTtct                                                                                          <  1:1592745/91‑1 (MQ=255)

ttCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTtct                                                                                          <  1:1380656/91‑1 (MQ=255)

ttCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTtct                                                                                          <  1:1380684/91‑1 (MQ=255)

  cATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTctct                                                                                        <  1:3351781/91‑1 (MQ=255)

  cATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTctct                                                                                        <  1:2782836/91‑1 (MQ=255)

   aTCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtg                                                                                       >  1:1901066/1‑91 (MQ=255)

   aTCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtg                                                                                       <  1:654828/91‑1 (MQ=255)

     cGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgtg                                                                                     <  1:2275011/91‑1 (MQ=255)

        aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCta                                                                                  >  1:786244/1‑91 (MQ=255)

            gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa                                                                              <  1:2947035/91‑1 (MQ=255)

            gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa                                                                              >  1:695945/1‑91 (MQ=255)

             atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTttataaatctttaga                                                                             >  1:734860‑M1/1‑76 (MQ=255)

             atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaaa                                                                             <  1:3710112/91‑1 (MQ=255)

                aaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTCCTATAAAATCa                                                                          >  1:3758249/1‑91 (MQ=255)

                  cTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGt                                                                        <  1:2921846/91‑1 (MQ=255)

                     gTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATg                                                                     >  1:1185145/1‑91 (MQ=255)

                      tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATgg                                                                    <  1:3070272/91‑1 (MQ=255)

                         aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGa                                                                 <  1:2003000/91‑1 (MQ=255)

                          gCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGaa                                                                >  1:2736142/1‑91 (MQ=255)

                           cTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAg                                                               <  1:764714/91‑1 (MQ=255)

                            ttAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGc                                                              >  1:262634/1‑91 (MQ=255)

                               aTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcaca                                                           >  1:2434132/1‑91 (MQ=255)

                               aTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcaca                                                           <  1:1145799/91‑1 (MQ=255)

                               aTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcaca                                                           <  1:1145835/91‑1 (MQ=255)

                                tttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAg                                                          <  1:3584495/91‑1 (MQ=255)

                                 ttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGt                                                         <  1:1222716/91‑1 (MQ=255)

                                 ttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGt                                                         <  1:1457075/91‑1 (MQ=255)

                                  tGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTg                                                        <  1:380959/91‑1 (MQ=255)

                                  tGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTg                                                        >  1:131444/1‑91 (MQ=255)

                                   gACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGa                                                       >  1:510704/1‑91 (MQ=255)

                                    aCAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGAt                                                      >  1:2493468/1‑91 (MQ=255)

                                       aTCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGTTCAt                                                   <  1:3271263/91‑1 (MQ=255)

                                        tCTAAAGCTTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACGGTGATCAtt                                                  <  1:2082977/91‑1 (MQ=255)

                                         cTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTg                                                 >  1:1883712/1‑91 (MQ=255)

                                         cTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTg                                                 >  1:4114088/1‑91 (MQ=255)

                                         cTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTg                                                 >  1:3409802/1‑91 (MQ=255)

                                          tAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGa                                                <  1:872567/91‑1 (MQ=255)

                                           aaaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGaa                                               >  1:2258595/1‑91 (MQ=255)

                                           aaaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGaa                                               <  1:3473387/91‑1 (MQ=255)

                                            aaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAAt                                              >  1:527402/1‑91 (MQ=255)

                                              gATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTc                                            <  1:899624/91‑1 (MQ=255)

                                               aTTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCt                                           <  1:1273380/91‑1 (MQ=255)

                                               aTTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCt                                           >  1:4045387/1‑91 (MQ=255)

                                                 ttATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGa                                         >  1:844622/1‑91 (MQ=255)

                                                  tataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGAc                                        <  1:3907466/91‑1 (MQ=255)

                                                  tataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGAc                                        >  1:2166787/1‑91 (MQ=255)

                                                  tataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCCATAAAATCAGTATGGCGAAGCACAGTGATGATTGAATTCTGAc                                        >  1:4146919/1‑91 (MQ=255)

                                                   ataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcgaattaagctggacacgtttatcatcttcgatg                                       >  1:3554194‑M1/1‑38 (MQ=255)

                                                   ataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACt                                       >  1:740162/1‑91 (MQ=255)

                                                      aaaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTta                                    >  1:855613/1‑91 (MQ=255)

                                                       aaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtat                                   <  1:1323783/91‑1 (MQ=255)

                                                       aaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtat                                   <  1:3647645/91‑1 (MQ=255)

                                                       aaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtat                                   >  1:3832164/1‑91 (MQ=255)

                                                        aaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtata                                  >  1:1645551/1‑91 (MQ=255)

                                                           gCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATaa                               >  1:2330269/1‑91 (MQ=255)

                                                           gCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATaa                               >  1:2330380/1‑91 (MQ=255)

                                                            ccGTTGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcata                              >  1:1773940‑M1/1‑29 (MQ=255)

                                                            ccGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAAt                              >  1:2402528/1‑91 (MQ=255)

                                                            ccGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAAt                              >  1:2401579/1‑91 (MQ=255)

                                                             cGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATc                             <  1:1061543/91‑1 (MQ=255)

                                                             cGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATc                             >  1:2542009/1‑91 (MQ=255)

                                                              gTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCa                            >  1:1979141/1‑91 (MQ=255)

                                                               ttGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaat                           >  1:1575364‑M1/1‑26 (MQ=255)

                                                               ttGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaat                           >  1:1609396‑M1/1‑26 (MQ=255)

                                                               ttGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaat                           >  1:1736459‑M1/1‑26 (MQ=255)

                                                               ttGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCaa                           >  1:182390/1‑91 (MQ=255)

                                                                tGGTCTCTTTGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAag                          <  1:3974791/91‑1 (MQ=255)

                                                                tGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaata                          >  1:1561836‑M1/1‑25 (MQ=255)

                                                                tGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAag                          <  1:63845/91‑1 (MQ=255)

                                                                tGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAag                          <  1:63992/91‑1 (MQ=255)

                                                                tGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAag                          >  1:71150/1‑91 (MQ=255)

                                                                  gTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAagag                        <  1:3128093/91‑1 (MQ=255)

                                                                  gTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAagag                        <  1:3072882/91‑1 (MQ=255)

                                                                  gTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAagag                        <  1:2579114/91‑1 (MQ=255)

                                                                   tctcTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGt                       <  1:3959549/91‑1 (MQ=255)

                                                                    ctctTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaaatttatcatcttcgatgaaactcataaatacttc                      >  1:3688381‑M1/1‑21 (MQ=255)

                                                                     tctTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTAt                     >  1:3115626/1‑91 (MQ=255)

                                                                      ctTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATc                    >  1:1914231/1‑91 (MQ=255)

                                                                      ctTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATc                    >  1:850848/1‑91 (MQ=255)

                                                                       ttCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCt                   <  1:1696398/91‑1 (MQ=255)

                                                                            aaCTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGa              >  1:703090/1‑91 (MQ=255)

                                                                              cTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATa            <  1:1617132/91‑1 (MQ=255)

                                                                                aCGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATaca          <  1:3298745/91‑1 (MQ=255)

                                                                                 cGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttcta         <  1:1065455‑M1/91‑84 (MQ=255)

                                                                                 cGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATacac         <  1:3764251/91‑1 (MQ=255)

                                                                                  ggCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctat        >  1:1394588‑M1/1‑7 (MQ=255)

                                                                                   gCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctata       <  1:217908‑M1/91‑86 (MQ=255)

                                                                                    cTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataa      >  1:447768‑M1/1‑5 (MQ=255)

                                                                                    cTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataa      <  1:3101015‑M1/91‑87 (MQ=255)

                                                                                    cTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataa      >  1:3667104‑M1/1‑5 (MQ=255)

                                                                                    cTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtga      <  1:2008671/91‑1 (MQ=255)

                                                                                     ttttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataac     >  1:3360032‑M1/1‑4 (MQ=255)

                                                                                     ttttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataac     <  1:69446‑M1/91‑88 (MQ=255)

                                                                                     ttttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataac     <  1:2843877‑M1/91‑88 (MQ=255)

                                                                                     ttttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgtactataac     >  1:2065019‑M1/1‑4 (MQ=255)

                                                                                      tttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataacc    >  1:1890856‑M1/1‑3 (MQ=255)

                                                                                       ttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataacct   >  1:4018357‑M1/1‑2 (MQ=255)

                                                                                        tttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataaccta  <  1:1797322‑M1/91‑91 (MQ=255)

                                                                                        tttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataaccta  <  1:821261‑M1/91‑91 (MQ=255)

TTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT  >  USA300TCH1516_ALE/2862986‑2863164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.